restricted the polishing step to long reads mode

nf-core · Sep 20, 2024 · c5c32d5 · c5c32d5
1 parent fc6c0b9
commit c5c32d5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/bacass.nf b/workflows/bacass.nf
@@ -298,7 +298,7 @@ workflow BACASS {
     //
     // SUBWORKFLOW: Long reads polishing. Uses medaka or Nanopolish (this last requires Fast5 files available in input samplesheet).
     //
-    if ( (params.assembly_type != 'short' && !params.skip_polish) || ( params.assembly_type != 'short' && params.polish_method) ){
+    if ( (params.assembly_type == 'long' && !params.skip_polish) || ( params.assembly_type != 'short' && params.polish_method) ){
         // Set channel for polishing long reads
         ch_for_assembly
             .join( ch_assembly )