Skip to content
Pytest-workflow

Fix invalid GATK container #18144

Sign in to view logs

Fix invalid GATK container

Fix invalid GATK container #18144

Triggered via pull request July 27, 2023 09:48
@adamrtalbotadamrtalbot
opened #3673
adamrtalbot:fix_gatk4_containers
Status Failure
Total duration 36m 1s
Artifacts 1

pytest-workflow.yml

on: pull_request
Check for changes
6s
Check for changes
Matrix: test
Fit to window
Zoom out
Zoom in

Annotations

1 error and 5 warnings
gatk4/postprocessgermlinecnvcalls singularity
Process completed with exit code 1.
gatk4/determinegermlinecontigploidy docker
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
gatk4/germlinecnvcaller docker
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
gatk4/postprocessgermlinecnvcalls docker
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
gatk4/germlinecnvcaller singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
gatk4/postprocessgermlinecnvcalls singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2, eWaterCycle/setup-singularity@v5, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Artifacts

Produced during runtime
Name Size
logs-singularity- Expired
2.08 MB