Switching from exit 1 to error-cmd and correcting error-msg

nf-core · Aug 1, 2023 · 026eaac · 026eaac
1 parent 101f14d
commit 026eaac
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/nf-core/cellranger/mkvdjref/main.nf b/modules/nf-core/cellranger/mkvdjref/main.nf
@@ -19,7 +19,7 @@ process CELLRANGER_MKVDJREF {
     script:
     // Exit if running this module with -profile conda / -profile mamba
     if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {
-        exit 1, "CELLRANGER_MKREF module does not support Conda. Please use Docker / Singularity / Podman instead."
+        error "CELLRANGER_MKVDJREF module does not support Conda. Please use Docker / Singularity / Podman instead."
     }
     def args = task.ext.args ?: ''
     """