change tests

nf-core · Nov 1, 2024 · 4d83b41 · 4d83b41
1 parent 2d6ed7d
commit 4d83b41
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Showing 2 changed files with 23 additions and 49 deletions.
diff --git a/modules/nf-core/doubletdetection/tests/main.nf.test b/modules/nf-core/doubletdetection/tests/main.nf.test
@@ -21,9 +21,20 @@ nextflow_process {
         }
 
         then {
+            def mb = 1024 * 1024 
+            def kb = 1024
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+
+                // Only check if output exists, as phenotype supports no random seeding:
+                // https://github.com/jacoblevine/PhenoGraph/issues/16
+                { assert path(process.out.h5ad.get(0).get(1)).exists() },
+                { assert path(process.out.predictions.get(0).get(1)).exists() },
+
+                { assert path(process.out.h5ad.get(0).get(1)).size() > 30 * mb },
+                { assert path(process.out.predictions.get(0).get(1)).size() > 50 * kb },
+
+                { assert snapshot(process.out.versions).match("versions") }
             )
         }
 

diff --git a/modules/nf-core/doubletdetection/tests/main.nf.test.snap b/modules/nf-core/doubletdetection/tests/main.nf.test.snap
@@ -1,21 +1,21 @@
 {
-    "scdownsteam - h5ad": {
+    "scdownstream - h5ad - stub": {
         "content": [
             {
                 "0": [
                     [
                         {
                             "id": "test"
                         },
-                        "test.h5ad:md5,8e452039b4db3f3791db690f508ec853"
+                        "test.h5ad:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "1": [
                     [
                         {
                             "id": "test"
                         },
-                        "test.pkl:md5,0e26d6b4f67f671efa4549e87f220b01"
+                        "test.pkl:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "2": [
@@ -26,15 +26,15 @@
                         {
                             "id": "test"
                         },
-                        "test.h5ad:md5,8e452039b4db3f3791db690f508ec853"
+                        "test.h5ad:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "predictions": [
                     [
                         {
                             "id": "test"
                         },
-                        "test.pkl:md5,0e26d6b4f67f671efa4549e87f220b01"
+                        "test.pkl:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "versions": [
@@ -46,55 +46,18 @@
             "nf-test": "0.8.4",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-10-31T20:20:20.035887346"
+        "timestamp": "2024-11-01T09:38:38.099329542"
     },
-    "scdownstream - h5ad - stub": {
+    "versions": {
         "content": [
-            {
-                "0": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        "test.h5ad:md5,d41d8cd98f00b204e9800998ecf8427e"
-                    ]
-                ],
-                "1": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        "test.pkl:md5,d41d8cd98f00b204e9800998ecf8427e"
-                    ]
-                ],
-                "2": [
-                    "versions.yml:md5,ac32922a834ca05946e47cb11e028705"
-                ],
-                "h5ad": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        "test.h5ad:md5,d41d8cd98f00b204e9800998ecf8427e"
-                    ]
-                ],
-                "predictions": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        "test.pkl:md5,d41d8cd98f00b204e9800998ecf8427e"
-                    ]
-                ],
-                "versions": [
-                    "versions.yml:md5,ac32922a834ca05946e47cb11e028705"
-                ]
-            }
+            [
+                "versions.yml:md5,b339d31cdc0422b203a26440591e1f12"
+            ]
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-10-31T20:20:41.897330916"
+        "timestamp": "2024-11-01T09:38:20.985491914"
     }
 }