args

nf-core · Oct 31, 2024 · 79179ea · 79179ea
1 parent 5a3aa68
commit 79179ea
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/nf-core/pbsv/call/main.nf b/modules/nf-core/pbsv/call/main.nf
@@ -22,7 +22,7 @@ process PBSV_CALL {
     def args = task.ext.args ?: ''
     def prefix = task.ext.prefix ?: "${meta.id}"
     """
-    pbsv call -j ${task.cpus} ${fasta} ${svsig} ${prefix}.vcf
+    pbsv call -j ${task.cpus} ${fasta} ${svsig} ${prefix}.vcf $args
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":