Remove now unnecessary variable from command

nf-core · Jul 27, 2023 · 8ae97bd · 8ae97bd
1 parent 7c74c5c
commit 8ae97bd
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/modules/nf-core/centrifuge/centrifuge/main.nf b/modules/nf-core/centrifuge/centrifuge/main.nf
@@ -47,8 +47,7 @@ process CENTRIFUGE_CENTRIFUGE {
         --report-file ${prefix}.report.txt \\
         -S ${prefix}.results.txt \\
         $unaligned \\
-        $aligned \\
-        $sam_output \\
+        $aligned
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":