Update tests

nf-core · Oct 30, 2024 · a544f2f · a544f2f
1 parent e2560c4
commit a544f2f
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Showing 2 changed files with 54 additions and 6 deletions.
diff --git a/modules/nf-core/scvitools/solo/tests/main.nf.test b/modules/nf-core/scvitools/solo/tests/main.nf.test
@@ -10,10 +10,10 @@ nextflow_process {
     tag "scvitools"
     tag "scvitools/solo"
 
-    test("scdownstream - h5ad") {
+    test("solo") {
         when {
             process {
-                """                
+                """
                 input[0] = [
                     [id: 'test'],
                     file("https://raw.githubusercontent.com/nf-core/test-datasets/scdownstream/samples/SAMN14430799_custom_emptydrops_filter_matrix.h5ad", checkIfExists: true)
@@ -25,19 +25,21 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(process.out.versions).match("versions") },
+                { assert snapshot(process.out.predictions[0][1]).match("predictions") },
+                { assert snapshot(process.out.h5ad[0][1]).match("h5ad") }
             )
         }
 
     }
 
-    test("scdownstream - h5ad - stub") {
+    test("solo - stub") {
 
         options "-stub"
 
         when {
             process {
-                """                
+                """
                 input[0] = [
                     [id: 'test'],
                     file("https://raw.githubusercontent.com/nf-core/test-datasets/scdownstream/samples/SAMN14430799_custom_emptydrops_filter_matrix.h5ad", checkIfExists: true)
@@ -49,7 +51,7 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(process.out.versions).match("versions-stub") }
             )
         }
 

diff --git a/modules/nf-core/scvitools/solo/tests/main.nf.test.snap b/modules/nf-core/scvitools/solo/tests/main.nf.test.snap
@@ -0,0 +1,46 @@
+{
+    "h5ad": {
+        "content": [
+            "test.h5ad:md5,f9383a40d73b94de0f3b37acbbc035e0"
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-10-30T22:34:08.119582652"
+    },
+    "versions": {
+        "content": [
+            [
+                "versions.yml:md5,0c1648ef0621ccd553306f34fa3a48ab"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-10-30T22:34:08.098413839"
+    },
+    "predictions": {
+        "content": [
+            "test.pkl:md5,900c699a6aac85a2742a6057f1b1f071"
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-10-30T22:34:08.113934941"
+    },
+    "versions-stub": {
+        "content": [
+            [
+                "versions.yml:md5,ed24509e2497f9c16ae5be9472becded"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-10-30T22:47:14.597527192"
+    }
+}