Select only relevant output channel in snakemake nf-test

nf-core · Jul 31, 2023 · c024266 · c024266
1 parent 4033bd6
commit c024266
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Showing 3 changed files with 4 additions and 111 deletions.
diff --git a/modules/nf-core/snakemake/main.nf b/modules/nf-core/snakemake/main.nf
@@ -14,7 +14,7 @@ process SNAKEMAKE {
     tuple val(meta2), path(snakemake)
 
     output:
-    tuple val(meta), path("**[!.snakemake]"), optional: true       , emit: outputs
+    tuple val(meta), path("**[!.snakemake]"), optional: true      , emit: outputs
     tuple val(meta), path(".snakemake", type: 'dir', hidden: true), emit: snakemake_dir
     path "versions.yml"                                           , emit: versions
 

diff --git a/tests/modules/nf-core/snakemake/main.nf.test b/tests/modules/nf-core/snakemake/main.nf.test
@@ -41,7 +41,7 @@ rule hello_world:
 
         then {
             assert process.success
-            assert snapshot(process.out).match()
+            assert snapshot(process.out.ouputs).match()
         }
 
     }

diff --git a/tests/modules/nf-core/snakemake/main.nf.test.snap b/tests/modules/nf-core/snakemake/main.nf.test.snap
@@ -1,113 +1,6 @@
 {
     "Should run without failures": {
-        "content": [
-            {
-                "0": [
-                    [
-                        {
-                            "id": "input"
-                        },
-                        [
-                            "2023-07-31T093650.969680.snakemake.log:md5,1ba1e5b1f45fd77c0a0b2fced5597c9a",
-                            "aGVsbG8udHh0:md5,5d5b69e1a49e8d8aeac628ee5526e94e",
-                            "hello.txt:md5,e59ff97941044f85df5297e1c302d260",
-                            "versions.yml:md5,91f038cba572e2b7b6dfe06e0e088ce5"
-                        ]
-                    ]
-                ],
-                "1": [
-                    [
-                        {
-                            "id": "input"
-                        },
-                        [
-                            [
-
-                            ],
-                            [
-
-                            ],
-                            [
-
-                            ],
-                            [
-
-                            ],
-                            [
-
-                            ],
-                            [
-                                "2023-07-31T093650.969680.snakemake.log:md5,1ba1e5b1f45fd77c0a0b2fced5597c9a"
-                            ],
-                            [
-                                "aGVsbG8udHh0:md5,5d5b69e1a49e8d8aeac628ee5526e94e"
-                            ],
-                            [
-
-                            ],
-                            [
-
-                            ]
-                        ]
-                    ]
-                ],
-                "2": [
-                    "versions.yml:md5,91f038cba572e2b7b6dfe06e0e088ce5"
-                ],
-                "outputs": [
-                    [
-                        {
-                            "id": "input"
-                        },
-                        [
-                            "2023-07-31T093650.969680.snakemake.log:md5,1ba1e5b1f45fd77c0a0b2fced5597c9a",
-                            "aGVsbG8udHh0:md5,5d5b69e1a49e8d8aeac628ee5526e94e",
-                            "hello.txt:md5,e59ff97941044f85df5297e1c302d260",
-                            "versions.yml:md5,91f038cba572e2b7b6dfe06e0e088ce5"
-                        ]
-                    ]
-                ],
-                "snakemake_dir": [
-                    [
-                        {
-                            "id": "input"
-                        },
-                        [
-                            [
-
-                            ],
-                            [
-
-                            ],
-                            [
-
-                            ],
-                            [
-
-                            ],
-                            [
-
-                            ],
-                            [
-                                "2023-07-31T093650.969680.snakemake.log:md5,1ba1e5b1f45fd77c0a0b2fced5597c9a"
-                            ],
-                            [
-                                "aGVsbG8udHh0:md5,5d5b69e1a49e8d8aeac628ee5526e94e"
-                            ],
-                            [
-
-                            ],
-                            [
-
-                            ]
-                        ]
-                    ]
-                ],
-                "versions": [
-                    "versions.yml:md5,91f038cba572e2b7b6dfe06e0e088ce5"
-                ]
-            }
-        ],
-        "timestamp": "2023-07-31T09:36:55+0000"
+        "content": null,
+        "timestamp": "2023-07-31T09:50:07+0000"
     }
 }