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minor typo fix for meta id
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@khersameesh24
khersameesh24 committed Oct 30, 2024
1 parent 549908c commit c72576c
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Showing 6 changed files with 20 additions and 20 deletions.
10 changes: 5 additions & 5 deletions modules/nf-core/xeniumranger/import-segmentation/tests/main.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ nextflow_process {
process {
"""
input[0] = Channel.of([
[id: "test_xeniumranger_relabel"],
[id: "test_xeniumranger_import-segmentation"],
]).combine(UNZIP.out.unzipped_archive.map { it[1] })
input[1] = 0
input[2] = []
Expand Down Expand Up @@ -94,7 +94,7 @@ nextflow_process {
process {
"""
input[0] = Channel.of([
[id: "test_xeniumranger_relabel"],
[id: "test_xeniumranger_import-segmentation"],
]).combine(UNZIP.out.unzipped_archive.map { it[1] })
input[1] = 0
input[2] = []
Expand Down Expand Up @@ -160,7 +160,7 @@ nextflow_process {
process {
"""
input[0] = Channel.of([
[id: "test_xeniumranger_relabel"],
[id: "test_xeniumranger_import-segmentation"],
]).combine(UNZIP.out.unzipped_archive.map { it[1] })
input[1] = 0
input[2] = UNZIP.out.unzipped_archive.map { it[1] } + "/segmentations/imagealignment.csv"
Expand Down Expand Up @@ -226,7 +226,7 @@ nextflow_process {
process {
"""
input[0] = Channel.of([
[id: "test_xeniumranger_relabel"],
[id: "test_xeniumranger_import-segmentation"],
]).combine(UNZIP.out.unzipped_archive.map { it[1] })
input[1] = 0
input[2] = []
Expand Down Expand Up @@ -293,7 +293,7 @@ nextflow_process {
process {
"""
input[0] = Channel.of([
[id: "test_xeniumranger_relabel"],
[id: "test_xeniumranger_import-segmentation"],
]).combine(UNZIP.out.unzipped_archive.map { it[1] })
input[1] = 0
input[2] = []
Expand Down
6 changes: 3 additions & 3 deletions modules/nf-core/xeniumranger/import-segmentation/tests/main.nf.test.snap
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Original file line number Diff line number Diff line change
Expand Up @@ -74,7 +74,7 @@
"0": [
[
{
"id": "test_xeniumranger_relabel"
"id": "test_xeniumranger_import-segmentation"
},
"fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
]
Expand All @@ -85,7 +85,7 @@
"outs": [
[
{
"id": "test_xeniumranger_relabel"
"id": "test_xeniumranger_import-segmentation"
},
"fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
]
Expand All @@ -99,7 +99,7 @@
"nf-test": "0.9.0",
"nextflow": "24.04.4"
},
"timestamp": "2024-10-30T12:55:58.357065"
"timestamp": "2024-10-30T22:49:39.204133"
},
"xeniumranger import-segmentation nuclei tif": {
"content": [
Expand Down
4 changes: 2 additions & 2 deletions modules/nf-core/xeniumranger/rename/tests/main.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ nextflow_process {
process {
"""
input[0] = Channel.of([
[id: "test_xeniumranger_relabel"],
[id: "test_xeniumranger_rename"],
]).combine(UNZIP.out.unzipped_archive.map { it[1] })
input[1] = "test_region"
input[2] = "test_cassette"
Expand Down Expand Up @@ -60,7 +60,7 @@ nextflow_process {
process {
"""
input[0] = Channel.of([
[id: "test_xeniumranger_relabel"],
[id: "test_xeniumranger_rename"],
]).combine(UNZIP.out.unzipped_archive.map { it[1] })
input[1] = "test_region"
input[2] = "test_cassette"
Expand Down
10 changes: 5 additions & 5 deletions modules/nf-core/xeniumranger/rename/tests/main.nf.test.snap
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
"0": [
[
{
"id": "test_xeniumranger_relabel"
"id": "test_xeniumranger_rename"
},
"fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
]
Expand All @@ -16,7 +16,7 @@
"outs": [
[
{
"id": "test_xeniumranger_relabel"
"id": "test_xeniumranger_rename"
},
"fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
]
Expand All @@ -30,7 +30,7 @@
"nf-test": "0.9.0",
"nextflow": "24.04.4"
},
"timestamp": "2024-10-30T12:00:02.547585"
"timestamp": "2024-10-30T23:10:43.918492"
},
"xeniumranger rename": {
"content": [
Expand All @@ -47,7 +47,7 @@
"cells.parquet:md5,e1450c7eca3d7ce0d4911c95042b1303",
"cells.zarr.zip:md5,556e47d5b14150239b10b2f801defa2b",
"gene_panel.json:md5,8890dd5fd90706e751554ac3fdfdedde",
"metrics_summary.csv:md5,ce5c0c32c2a6994dd29e1595b439125b",
"metrics_summary.csv:md5,54ad3944eb3ba6a4d7bda01bc2a6bb1c",
"morphology.ome.tif:md5,6b65fff28a38a001b8f25061737fbf9b",
"morphology_focus_0000.ome.tif:md5,90e796ad634d14e62cf2ebcadf2eaf98",
"nucleus_boundaries.csv.gz:md5,e417b6e293298870956d42c7106cbd0c",
Expand All @@ -60,6 +60,6 @@
"nf-test": "0.9.0",
"nextflow": "24.04.4"
},
"timestamp": "2024-10-30T11:59:45.587263"
"timestamp": "2024-10-30T23:10:34.499597"
}
}
4 changes: 2 additions & 2 deletions modules/nf-core/xeniumranger/resegment/tests/main.nf.test
View file
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ nextflow_process {
process {
"""
input[0] = Channel.of([
[id: "test_xeniumranger_relabel"],
[id: "test_xeniumranger_resegment"],
]).combine(UNZIP.out.unzipped_archive.map { it[1] })
input[1] = []
input[2] = []
Expand Down Expand Up @@ -58,7 +58,7 @@ nextflow_process {
process {
"""
input[0] = Channel.of([
[id: "test_xeniumranger_relabel"],
[id: "test_xeniumranger_resegment"],
]).combine(UNZIP.out.unzipped_archive.map { it[1] })
input[1] = []
input[2] = []
Expand Down
6 changes: 3 additions & 3 deletions modules/nf-core/xeniumranger/resegment/tests/main.nf.test.snap
View file
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
"0": [
[
{
"id": "test_xeniumranger_relabel"
"id": "test_xeniumranger_resegment"
},
"fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
]
Expand All @@ -16,7 +16,7 @@
"outs": [
[
{
"id": "test_xeniumranger_relabel"
"id": "test_xeniumranger_resegment"
},
"fake_file.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
]
Expand All @@ -30,6 +30,6 @@
"nf-test": "0.9.0",
"nextflow": "24.04.4"
},
"timestamp": "2024-10-30T12:23:55.768779"
"timestamp": "2024-10-30T23:22:35.438329"
}
}

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