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Refactor tests #360

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Refactor tests

Refactor tests #360

Triggered via pull request August 1, 2024 20:48
@edmundmilleredmundmiller
synchronize #152
nft-bam
Status Failure
Total duration 15m 21s
Artifacts –

ci.yml

on: pull_request
Check for changes
19s
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Matrix: test
confirm-pass
0s
confirm-pass
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25 errors and 13 warnings
HISAT2.Should run with defaults: HISAT2#L1
Assertion failed: 1 of 3 assertions failed
workflows/tests/aligner/hisat2.nf.test docker NF-23.04.0
Process completed with exit code 1.
workflows/tests/aligner/hisat2.nf.test docker NF-23.04.0
Process completed with exit code 1.
Bowtie2.Should run with defaults: Bowtie2#L1
Assertion failed: 1 of 3 assertions failed
workflows/tests/aligner/bowtie2.nf.test docker NF-23.04.0
Process completed with exit code 1.
workflows/tests/aligner/bowtie2.nf.test docker NF-23.04.0
Process completed with exit code 1.
Bowtie2.Should run with defaults: Bowtie2#L1
Assertion failed: 1 of 3 assertions failed
workflows/tests/aligner/bowtie2.nf.test docker NF-
Process completed with exit code 1.
workflows/tests/aligner/bowtie2.nf.test docker NF-
Process completed with exit code 1.
DRAGMAP.Should run with defaults: DRAGMAP#L1
Assertion failed: 1 of 3 assertions failed
DRAGMAP.Should run with defaults: DRAGMAP#L1
Assertion failed: 1 of 3 assertions failed
workflows/tests/aligner/dragmap.nf.test docker NF-
Process completed with exit code 1.
workflows/tests/aligner/dragmap.nf.test docker NF-
Process completed with exit code 1.
workflows/tests/aligner/dragmap.nf.test docker NF-23.04.0
Process completed with exit code 1.
workflows/tests/aligner/dragmap.nf.test docker NF-23.04.0
Process completed with exit code 1.
HISAT2.Should run with defaults: HISAT2#L1
Assertion failed: 2 of 3 assertions failed
workflows/tests/aligner/hisat2.nf.test docker NF-
Process completed with exit code 1.
workflows/tests/aligner/hisat2.nf.test docker NF-
Process completed with exit code 1.
BWA.Should run with defaults: BWA#L1
Assertion failed: 1 of 3 assertions failed
BWA.Should run with defaults: BWA#L1
Assertion failed: 1 of 3 assertions failed
workflows/tests/aligner/bwa.nf.test docker NF-
Process completed with exit code 1.
workflows/tests/aligner/bwa.nf.test docker NF-
Process completed with exit code 1.
workflows/tests/aligner/bwa.nf.test docker NF-23.04.0
Process completed with exit code 1.
workflows/tests/aligner/bwa.nf.test docker NF-23.04.0
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
Check for changes
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/hisat2.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/bwamem2.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/bowtie2.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/bowtie2.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/bwamem2.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/dragmap.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/dragmap.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/hisat2.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/bwa.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/bwa.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/star.nf.test docker NF-23.04.0
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/tests/aligner/star.nf.test docker NF-
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/