test(grohmm): Update all the snapshots

nf-core · Sep 27, 2024 · 89051e5 · 89051e5
1 parent 2069b8e
commit 89051e5
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Showing 6 changed files with 19 additions and 5 deletions.
diff --git a/modules/local/grohmm/parametertuning/tests/main.nf.test b/modules/local/grohmm/parametertuning/tests/main.nf.test
@@ -3,6 +3,7 @@ nextflow_process {
     name "Test Process GROHMM_PARAMETERTUNING"
     script "modules/local/grohmm/parametertuning/main.nf"
     process "GROHMM_PARAMETERTUNING"
+    tag "grohmm"
 
     test("Should run with defaults") {
         when {

diff --git a/modules/local/grohmm/parametertuning/tests/main.nf.test.snap b/modules/local/grohmm/parametertuning/tests/main.nf.test.snap
@@ -21,14 +21,14 @@
                     {
                         "id": "Sall"
                     },
-                    "Sall_5_-100.tuning.csv:md5,abe7dd590cb307eff7abb293eec38190"
+                    "Sall_5_-100.tuning.csv:md5,8aa24d2be05aa03dba5b8bc7b465dc68"
                 ]
             ]
         ],
         "meta": {
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-09-24T11:44:17.28827251"
+        "timestamp": "2024-09-25T21:37:42.807799467"
     }
 }
diff --git a/modules/local/grohmm/transcriptcalling/tests/main.nf.test b/modules/local/grohmm/transcriptcalling/tests/main.nf.test
@@ -3,6 +3,7 @@ nextflow_process {
     name "Test Process GROHMM_TRANSCRIPTCALLING"
     script "modules/local/grohmm/transcriptcalling/main.nf"
     process "GROHMM_TRANSCRIPTCALLING"
+    tag "groHMM"
 
     test("Should fail without a tuning file") {
         when {

diff --git a/workflows/tests/transcript_indentification/grohmm/skip_tuning/main.nf.test b/workflows/tests/transcript_indentification/grohmm/skip_tuning/main.nf.test
@@ -1,7 +1,7 @@
 nextflow_pipeline {
 
     name "groHMM"
-    script "../../../main.nf"
+    script "../../../../../main.nf"
     tag "groHMM"
 
     test("Should be able to skip tuning") {
@@ -17,7 +17,7 @@ nextflow_pipeline {
         then {
             assertAll(
                 // TODO Support a tuning file
-                { assert workflow.failure },
+                { assert workflow.failed },
             )
         }
     }

diff --git a/workflows/tests/transcript_indentification/grohmm/tuning/main.nf.test b/workflows/tests/transcript_indentification/grohmm/tuning/main.nf.test
@@ -1,6 +1,6 @@
 nextflow_pipeline {
     name "groHMM"
-    script "../../../main.nf"
+    script "../../../../../main.nf"
     tag "groHMM"
 
     test("Should run with defaults") {

diff --git a/workflows/tests/transcript_indentification/grohmm/tuning/main.nf.test.snap b/workflows/tests/transcript_indentification/grohmm/tuning/main.nf.test.snap
@@ -0,0 +1,12 @@
+{
+    "software_versions": {
+        "content": [
+            "{BBMAP_PILEUP={bbmap=39.01, samtools=1.16.1, pigz=2.6}, BEDTOOLS_GENOMECOV_MINUS={bedtools=2.31.1}, BEDTOOLS_GENOMECOV_PLUS={bedtools=2.31.1}, BWA_INDEX={bwa=0.7.18-r1243-dirty}, BWA_MEM={bwa=0.7.18-r1243-dirty, samtools=1.2}, CUSTOM_GETCHROMSIZES={getchromsizes=1.2}, DEEPTOOLS_BAMCOVERAGE_MINUS={deeptools=3.5.1}, DEEPTOOLS_BAMCOVERAGE_PLUS={deeptools=3.5.1}, FASTP={fastp=0.23.4}, FASTQC={fastqc=0.12.1}, GROHMM_PARAMETERTUNING={r-base=4.3.3, bioconductor-grohmm=1.39.0}, GTF2BED={perl=5.26.2}, HOMER_MAKETAGDIRECTORY={homer=4.11, samtools=1.11}, PINTS_CALLER={python=3.10.6, pints=1.1.8}, PRESEQ_CCURVE={preseq=3.1.1}, PRESEQ_LCEXTRAP={preseq=3.1.1}, RSEQC_INFEREXPERIMENT={rseqc=5.0.2}, RSEQC_READDISTRIBUTION={rseqc=5.0.2}, RSEQC_READDUPLICATION={rseqc=5.0.2}, SUBREAD_FEATURECOUNTS_GENE={subread=2.0.1}, Workflow={nf-core/nascent=v2.3.0dev}}"
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
+        },
+        "timestamp": "2024-09-26T03:52:06.649510139"
+    }
+}