Fixed publishDir for visualization processes

nf-core · Jan 24, 2024 · 9beb427 · 9beb427
1 parent 30d36cb
commit 9beb427
Showing 1 changed file with 13 additions and 6 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -111,20 +111,27 @@ process {
         time        = { 20.minute * task.attempt }
         stageInMode = 'copy'
         publishDir  = [
-            path:    "${params.outdir}/trend/pyramid/",
-            saveAs:  { "${it.substring(12,it.indexOf("."))}/trend/${it.substring(0,11)}/$it" },
-            pattern: '*.tif*',
-            mode:    params.publish_dir_mode
+            [
+                path:    { "${params.outdir}/trend/pyramid/" },
+                saveAs:  { "${it.substring(12,it.indexOf("."))}/trend/${it.substring(0,11)}/$it" },
+                pattern: '*.tif*',
+                mode:    params.publish_dir_mode
+            ],
+            [
+                path:    { "${params.outdir}/trend/pyramid/" },
+                pattern: 'versions.yml',
+                mode:    params.publish_dir_mode
+            ]
         ]
     }
 
     withName: "FORCE_MOSAIC" {
         memory     = { 1500.MB * task.attempt }
         time       = { 20.minute * task.attempt }
         publishDir = [
-            path:    "${params.outdir}/trend/mosaic/",
+            path:    { "${params.outdir}/trend/mosaic/" },
             mode:    params.publish_dir_mode,
-            saveAs:  { it.equals('versions.yml') ? null : "${params.outdir}/trend/mosaic/${task.tag}/${it.replaceAll("trend/","")}"}
+            saveAs:  {"${params.outdir}/trend/mosaic/${task.tag}/${it.replaceAll("trend/","")}"}
         ]
     }