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Important! Template update for nf-core/tools v3.0.2 #220

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Important! Template update for nf-core/tools v3.0.2

Important! Template update for nf-core/tools v3.0.2 #220

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8s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test | docker)
3m 55s
Run pipeline with test data (24.04.2 | modules/nf-core/ribotish/predict/tests/main.nf.test | docker)
4m 13s
Run pipeline with test data (24.04.2 | modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test | docker)
4m 15s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/preprocess_rnaseq/tests/main.nf.test | docker)
3m 48s
Run pipeline with test data (24.04.2 | modules/nf-core/ribotricer/detectorfs/tests/main.nf.test | docker)
4m 14s
Run pipeline with test data (24.04.2 | modules/nf-core/ribotricer/prepareorfs/tests/main.nf.test | docker)
4m 15s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | docker)
2m 57s
Run pipeline with test data (24.04.2 | modules/nf-core/gunzip/tests/main.nf.test | docker)
2m 41s
Run pipeline with test data (24.04.2 | modules/nf-core/cutadapt/tests/main.nf.test | docker)
4m 13s
Run pipeline with test data (24.04.2 | modules/nf-core/tximeta/tximport/tests/main.nf.test | docker)
4m 14s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | docker)
4m 6s
Run pipeline with test data (24.04.2 | modules/nf-core/umitools/extract/tests/main.nf.test | docker)
3m 12s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test | docker)
3m 19s
Run pipeline with test data (24.04.2 | modules/nf-core/samtools/stats/tests/main.nf.test | docker)
4m 13s
Run pipeline with test data (24.04.2 | modules/nf-core/cat/fastq/tests/main.nf.test | docker)
3m 53s
Run pipeline with test data (24.04.2 | modules/nf-core/trimgalore/tests/main.nf.test | docker)
4m 18s
Run pipeline with test data (24.04.2 | modules/nf-core/fastqc/tests/main.nf.test | docker)
4m 17s
Run pipeline with test data (24.04.2 | modules/nf-core/custom/tx2gene/tests/main.nf.test | docker)
4m 17s
Run pipeline with test data (24.04.2 | modules/nf-core/fastp/tests/main.nf.test | docker)
4m 17s
Run pipeline with test data (24.04.2 | modules/nf-core/salmon/quant/tests/main.nf.test | docker)
4m 16s
Run pipeline with test data (24.04.2 | modules/nf-core/custom/getchromsizes/tests/main.nf.test | docker)
4m 14s
Run pipeline with test data (24.04.2 | modules/nf-core/samtools/sort/tests/main.nf.test | docker)
3m 15s
Run pipeline with test data (24.04.2 | modules/nf-core/multiqc/tests/main.nf.test | docker)
3m 48s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | docker)
3m 12s
Run pipeline with test data (24.04.2 | modules/nf-core/untar/tests/main.nf.test | docker)
4m 16s
Run pipeline with test data (24.04.2 | modules/nf-core/umitools/dedup/tests/main.nf.test | docker)
3m 22s
Run pipeline with test data (24.04.2 | modules/nf-core/fq/subsample/tests/main.nf.test | docker)
3m 15s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test | docker)
4m 13s
Run pipeline with test data (24.04.2 | modules/nf-core/star/align/tests/main.nf.test | docker)
4m 15s
Run pipeline with test data (24.04.2 | modules/nf-core/umitools/prepareforrsem/tests/main.nf.test | docker)
3m 18s
Run pipeline with test data (24.04.2 | modules/nf-core/kallisto/quant/tests/main.nf.test | docker)
4m 5s
Run pipeline with test data (24.04.2 | modules/nf-core/samtools/index/tests/main.nf.test | docker)
3m 19s
Run pipeline with test data (24.04.2 | modules/nf-core/salmon/index/tests/main.nf.test | docker)
2m 46s
Run pipeline with test data (24.04.2 | modules/nf-core/gffread/tests/main.nf.test | docker)
4m 15s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test | docker)
4m 12s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | docker)
4m 11s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test | docker)
2m 58s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test | docker)
4m 15s
Run pipeline with test data (24.04.2 | tests/main.nf.test | docker)
4m 12s
Run pipeline with test data (24.04.2 | modules/nf-core/custom/catadditionalfasta/tests/main.nf.test | docker)
3m 0s
Run pipeline with test data (24.04.2 | modules/nf-core/rsem/preparereference/tests/main.nf.test | docker)
3m 18s
Run pipeline with test data (24.04.2 | modules/nf-core/bbmap/bbsplit/tests/main.nf.test | docker)
4m 11s
Run pipeline with test data (24.04.2 | modules/nf-core/samtools/idxstats/tests/main.nf.test | docker)
2m 35s
Run pipeline with test data (24.04.2 | modules/nf-core/ribotish/quality/tests/main.nf.test | docker)
3m 34s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | docker)
3m 40s
Run pipeline with test data (24.04.2 | modules/nf-core/anota2seq/anota2seqrun/tests/main.nf.test | docker)
4m 13s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test | docker)
2m 54s
Run pipeline with test data (24.04.2 | modules/nf-core/samtools/flagstat/tests/main.nf.test | docker)
4m 14s
Run pipeline with test data (24.04.2 | modules/nf-core/kallisto/index/tests/main.nf.test | docker)
2m 33s
Run pipeline with test data (24.04.2 | modules/nf-core/star/genomegenerate/tests/main.nf.test | docker)
3m 25s
Run pipeline with test data (24.04.2 | subworkflows/nf-core/fastq_align_star/tests/main.nf.test | docker)
4m 15s
Run pipeline with test data (24.04.2 | modules/nf-core/sortmerna/tests/main.nf.test | docker)
4m 14s
Run pipeline with test data (latest-everything | subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/ribotish/predict/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | subworkflows/nf-core/preprocess_rnaseq/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/ribotricer/detectorfs/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/ribotricer/prepareorfs/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/gunzip/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/cutadapt/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/tximeta/tximport/tests/main.nf.test | docker)
4m 7s
Run pipeline with test data (latest-everything | subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | docker)
4m 9s
Run pipeline with test data (latest-everything | modules/nf-core/umitools/extract/tests/main.nf.test | docker)
2m 39s
Run pipeline with test data (latest-everything | subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test | docker)
1m 35s
Run pipeline with test data (latest-everything | modules/nf-core/samtools/stats/tests/main.nf.test | docker)
4m 6s
Run pipeline with test data (latest-everything | modules/nf-core/cat/fastq/tests/main.nf.test | docker)
2m 19s
Run pipeline with test data (latest-everything | modules/nf-core/trimgalore/tests/main.nf.test | docker)
1m 34s
Run pipeline with test data (latest-everything | modules/nf-core/fastqc/tests/main.nf.test | docker)
1m 24s
Run pipeline with test data (latest-everything | modules/nf-core/custom/tx2gene/tests/main.nf.test | docker)
1m 25s
Run pipeline with test data (latest-everything | modules/nf-core/fastp/tests/main.nf.test | docker)
1m 11s
Run pipeline with test data (latest-everything | modules/nf-core/salmon/quant/tests/main.nf.test | docker)
1m 24s
Run pipeline with test data (latest-everything | modules/nf-core/custom/getchromsizes/tests/main.nf.test | docker)
1m 11s
Run pipeline with test data (latest-everything | modules/nf-core/samtools/sort/tests/main.nf.test | docker)
1m 10s
Run pipeline with test data (latest-everything | modules/nf-core/multiqc/tests/main.nf.test | docker)
1m 9s
Run pipeline with test data (latest-everything | subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | docker)
55s
Run pipeline with test data (latest-everything | modules/nf-core/untar/tests/main.nf.test | docker)
51s
Run pipeline with test data (latest-everything | modules/nf-core/umitools/dedup/tests/main.nf.test | docker)
54s
Run pipeline with test data (latest-everything | modules/nf-core/fq/subsample/tests/main.nf.test | docker)
52s
Run pipeline with test data (latest-everything | subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test | docker)
50s
Run pipeline with test data (latest-everything | modules/nf-core/star/align/tests/main.nf.test | docker)
47s
Run pipeline with test data (latest-everything | modules/nf-core/umitools/prepareforrsem/tests/main.nf.test | docker)
48s
Run pipeline with test data (latest-everything | modules/nf-core/kallisto/quant/tests/main.nf.test | docker)
49s
Run pipeline with test data (latest-everything | modules/nf-core/samtools/index/tests/main.nf.test | docker)
42s
Run pipeline with test data (latest-everything | modules/nf-core/salmon/index/tests/main.nf.test | docker)
35s
Run pipeline with test data (latest-everything | modules/nf-core/gffread/tests/main.nf.test | docker)
30s
Run pipeline with test data (latest-everything | subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test | docker)
17s
Run pipeline with test data (latest-everything | subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | docker)
5s
Run pipeline with test data (latest-everything | subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/custom/catadditionalfasta/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/rsem/preparereference/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/bbmap/bbsplit/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/samtools/idxstats/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/ribotish/quality/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/anota2seq/anota2seqrun/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/samtools/flagstat/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/kallisto/index/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/star/genomegenerate/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | subworkflows/nf-core/fastq_align_star/tests/main.nf.test | docker)
1s
Run pipeline with test data (latest-everything | modules/nf-core/sortmerna/tests/main.nf.test | docker)
1s
confirm-pass
1s
3h 55m 12s