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Nf core template merge 2.13 (manual) #75

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Nf core template merge 2.13 (manual)

Nf core template merge 2.13 (manual) #75

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4s
nf-test pipeline_riboseq docker nf-23.10.0
19m 25s
nf-test subworkflows/bam_sort_stats_samtools docker nf-23.10.0
6m 11s
nf-test subworkflows/bam_stats_samtools docker nf-23.10.0
4m 6s
nf-test subworkflows/bam_dedup_stats_samtools_umitools docker nf-23.10.0
3m 10s
nf-test subworkflows/utils_nfvalidation_plugin docker nf-23.10.0
3m 10s
nf-test subworkflows/fastq_align_star docker nf-23.10.0
5m 25s
nf-test subworkflows/fastq_subsample_fq_salmon docker nf-23.10.0
5m 31s
nf-test subworkflows/utils_nfcore_pipeline docker nf-23.10.0
4m 38s
nf-test subworkflows/fastq_fastqc_umitools_fastp docker nf-23.10.0
4m 17s
nf-test subworkflows/utils_nextflow_pipeline docker nf-23.10.0
4m 28s
nf-test subworkflows/preprocess_rnaseq docker nf-23.10.0
3m 54s
nf-test fq/subsample docker nf-23.10.0
3m 28s
nf-test untar docker nf-23.10.0
2m 59s
nf-test multiqc docker nf-23.10.0
5m 45s
nf-test samtools/stats docker nf-23.10.0
7m 33s
nf-test samtools/sort docker nf-23.10.0
4m 53s
nf-test samtools/flagstat docker nf-23.10.0
4m 13s
nf-test samtools/index docker nf-23.10.0
3m 44s
nf-test samtools/idxstats docker nf-23.10.0
5m 48s
nf-test cutadapt docker nf-23.10.0
4m 35s
nf-test custom/catadditionalfasta docker nf-23.10.0
3m 28s
nf-test custom/getchromsizes docker nf-23.10.0
3m 50s
nf-test bbmap/bbsplit docker nf-23.10.0
6m 7s
nf-test fastqc docker nf-23.10.0
7m 10s
nf-test kallisto/index docker nf-23.10.0
2m 38s
nf-test hisat2/extractsplicesites docker nf-23.10.0
2m 45s
nf-test hisat2/build docker nf-23.10.0
2m 39s
nf-test sortmerna docker nf-23.10.0
4m 28s
nf-test trimgalore docker nf-23.10.0
3m 49s
nf-test fastp docker nf-23.10.0
4m 52s
nf-test salmon/index docker nf-23.10.0
5m 22s
nf-test salmon/quant docker nf-23.10.0
5m 28s
nf-test star/genomegenerate docker nf-23.10.0
14m 0s
nf-test star/align docker nf-23.10.0
13m 35s
nf-test cat/fastq docker nf-23.10.0
5m 39s
nf-test gunzip docker nf-23.10.0
3m 20s
nf-test gffread docker nf-23.10.0
4m 26s
nf-test rsem/preparereference docker nf-23.10.0
5m 30s
nf-test umitools/prepareforrsem docker nf-23.10.0
2m 48s
nf-test umitools/extract docker nf-23.10.0
3m 31s
nf-test pipeline_riboseq docker nf-latest-everything
19m 30s
nf-test subworkflows/bam_sort_stats_samtools docker nf-latest-everything
5m 53s
nf-test subworkflows/bam_stats_samtools docker nf-latest-everything
4m 23s
nf-test subworkflows/bam_dedup_stats_samtools_umitools docker nf-latest-everything
5m 47s
nf-test subworkflows/utils_nfvalidation_plugin docker nf-latest-everything
3m 18s
nf-test subworkflows/fastq_align_star docker nf-latest-everything
5m 34s
nf-test subworkflows/fastq_subsample_fq_salmon docker nf-latest-everything
3m 48s
nf-test subworkflows/utils_nfcore_pipeline docker nf-latest-everything
3m 30s
nf-test subworkflows/fastq_fastqc_umitools_fastp docker nf-latest-everything
5m 35s
nf-test subworkflows/utils_nextflow_pipeline docker nf-latest-everything
3m 6s
nf-test subworkflows/preprocess_rnaseq docker nf-latest-everything
3m 46s
nf-test fq/subsample docker nf-latest-everything
5m 28s
nf-test untar docker nf-latest-everything
3m 10s
nf-test multiqc docker nf-latest-everything
5m 14s
nf-test samtools/stats docker nf-latest-everything
5m 37s
nf-test samtools/sort docker nf-latest-everything
6m 36s
nf-test samtools/flagstat docker nf-latest-everything
5m 52s
nf-test samtools/index docker nf-latest-everything
4m 2s
nf-test samtools/idxstats docker nf-latest-everything
5m 14s
nf-test cutadapt docker nf-latest-everything
3m 1s
nf-test custom/catadditionalfasta docker nf-latest-everything
2m 59s
nf-test custom/getchromsizes docker nf-latest-everything
2m 48s
nf-test bbmap/bbsplit docker nf-latest-everything
5m 21s
nf-test fastqc docker nf-latest-everything
7m 37s
nf-test kallisto/index docker nf-latest-everything
4m 18s
nf-test hisat2/extractsplicesites docker nf-latest-everything
2m 57s
nf-test hisat2/build docker nf-latest-everything
2m 58s
nf-test sortmerna docker nf-latest-everything
6m 54s
nf-test trimgalore docker nf-latest-everything
3m 58s
nf-test fastp docker nf-latest-everything
4m 50s
nf-test salmon/index docker nf-latest-everything
4m 31s
nf-test salmon/quant docker nf-latest-everything
5m 41s
nf-test star/genomegenerate docker nf-latest-everything
15m 21s
nf-test star/align docker nf-latest-everything
15m 14s
nf-test cat/fastq docker nf-latest-everything
6m 13s
nf-test gunzip docker nf-latest-everything
3m 40s
nf-test gffread docker nf-latest-everything
4m 31s
nf-test rsem/preparereference docker nf-latest-everything
6m 9s
nf-test umitools/prepareforrsem docker nf-latest-everything
4m 11s
nf-test umitools/extract docker nf-latest-everything
3m 28s
confirm-pass
1s
7h 14m 46s