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Ribotricer orf prediction #108

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Ribotricer orf prediction

Ribotricer orf prediction #108

Run time

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Job Run time
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5s
SORTMERNA docker NF-latest-everything
3m 4s
HISAT2_BUILD docker NF-latest-everything
40s
BBMAP_BBSPLIT docker NF-latest-everything
56s
BAM_SORT_STATS_SAMTOOLS docker NF-latest-everything
56s
FASTP docker NF-latest-everything
2m 53s
SAMTOOLS_FLAGSTAT docker NF-latest-everything
36s
UMITOOLS_DEDUP docker NF-latest-everything
1m 34s
UNTAR docker NF-latest-everything
57s
UMITOOLS_PREPAREFORRSEM docker NF-latest-everything
57s
SALMON_INDEX docker NF-latest-everything
49s
STAR_GENOMEGENERATE docker NF-latest-everything
1m 9s
SAMTOOLS_IDXSTATS docker NF-latest-everything
49s
FASTQC docker NF-latest-everything
4m 27s
RIBOTRICER_PREPAREORFS docker NF-latest-everything
2m 10s
GUNZIP docker NF-latest-everything
7m 28s
BAM_STATS_SAMTOOLS docker NF-latest-everything
2m 6s
PIPELINE docker NF-latest-everything
23m 9s
STAR_ALIGN docker NF-latest-everything
8m 35s
RIBOTISH_QUALITY docker NF-latest-everything
1m 30s
CAT_FASTQ docker NF-latest-everything
1m 20s
RIBOTRICER_DETECTORFS docker NF-latest-everything
4m 9s
UTILS_NFCORE_PIPELINE docker NF-latest-everything
1m 21s
CUSTOM_CATADDITIONALFASTA docker NF-latest-everything
47s
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
1m 21s
SALMON_QUANT docker NF-latest-everything
1m 40s
TRIMGALORE docker NF-latest-everything
2m 24s
HISAT2_EXTRACTSPLICESITES docker NF-latest-everything
48s
SAMTOOLS_STATS docker NF-latest-everything
1m 9s
RSEM_PREPAREREFERENCE docker NF-latest-everything
1m 0s
GFFREAD docker NF-latest-everything
52s
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-latest-everything
59s
CUTADAPT docker NF-latest-everything
53s
FQ_SUBSAMPLE docker NF-latest-everything
1m 20s
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
1m 2s
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-latest-everything
48s
SAMTOOLS_SORT docker NF-latest-everything
1m 2s
PREPROCESS_RNASEQ docker NF-latest-everything
1m 46s
UMITOOLS_EXTRACT docker NF-latest-everything
2m 2s
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-latest-everything
1m 59s
MULTIQC docker NF-latest-everything
1m 35s
FASTQ_ALIGN_STAR docker NF-latest-everything
3m 31s
CUSTOM_GETCHROMSIZES docker NF-latest-everything
52s
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-latest-everything
56s
KALLISTO_INDEX docker NF-latest-everything
45s
SAMTOOLS_INDEX docker NF-latest-everything
1m 21s
RIBOTISH_PREDICT docker NF-latest-everything
2m 49s
SORTMERNA docker NF-23.04
2m 59s
HISAT2_BUILD docker NF-23.04
39s
BBMAP_BBSPLIT docker NF-23.04
49s
BAM_SORT_STATS_SAMTOOLS docker NF-23.04
1m 1s
FASTP docker NF-23.04
2m 45s
SAMTOOLS_FLAGSTAT docker NF-23.04
37s
UMITOOLS_DEDUP docker NF-23.04
1m 16s
UNTAR docker NF-23.04
46s
UMITOOLS_PREPAREFORRSEM docker NF-23.04
1m 11s
SALMON_INDEX docker NF-23.04
47s
STAR_GENOMEGENERATE docker NF-23.04
1m 23s
SAMTOOLS_IDXSTATS docker NF-23.04
44s
FASTQC docker NF-23.04
4m 24s
RIBOTRICER_PREPAREORFS docker NF-23.04
1m 28s
GUNZIP docker NF-23.04
7m 11s
BAM_STATS_SAMTOOLS docker NF-23.04
1m 55s
PIPELINE docker NF-23.04
23m 19s
STAR_ALIGN docker NF-23.04
8m 36s
RIBOTISH_QUALITY docker NF-23.04
1m 24s
CAT_FASTQ docker NF-23.04
1m 15s
RIBOTRICER_DETECTORFS docker NF-23.04
4m 59s
UTILS_NFCORE_PIPELINE docker NF-23.04
1m 22s
CUSTOM_CATADDITIONALFASTA docker NF-23.04
36s
UTILS_NEXTFLOW_PIPELINE docker NF-23.04
1m 11s
SALMON_QUANT docker NF-23.04
1m 38s
TRIMGALORE docker NF-23.04
2m 9s
HISAT2_EXTRACTSPLICESITES docker NF-23.04
42s
SAMTOOLS_STATS docker NF-23.04
1m 30s
RSEM_PREPAREREFERENCE docker NF-23.04
49s
GFFREAD docker NF-23.04
46s
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-23.04
1m 5s
CUTADAPT docker NF-23.04
44s
FQ_SUBSAMPLE docker NF-23.04
1m 20s
UTILS_NFVALIDATION_PLUGIN docker NF-23.04
55s
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-23.04
47s
SAMTOOLS_SORT docker NF-23.04
1m 17s
PREPROCESS_RNASEQ docker NF-23.04
1m 24s
UMITOOLS_EXTRACT docker NF-23.04
2m 5s
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04
1m 53s
MULTIQC docker NF-23.04
1m 33s
FASTQ_ALIGN_STAR docker NF-23.04
3m 34s
CUSTOM_GETCHROMSIZES docker NF-23.04
51s
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-23.04
1m 0s
KALLISTO_INDEX docker NF-23.04
32s
SAMTOOLS_INDEX docker NF-23.04
54s
RIBOTISH_PREDICT docker NF-23.04
2m 34s
confirm-pass
1s
3h 28m 1s