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Ribotricer orf prediction #109

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Ribotricer orf prediction

Ribotricer orf prediction #109

Run time

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Job Run time
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6s
RIBOTISH_PREDICT docker NF-latest-everything
2m 18s
FASTQ_ALIGN_STAR docker NF-latest-everything
3m 23s
SAMTOOLS_FLAGSTAT docker NF-latest-everything
30s
SORTMERNA docker NF-latest-everything
2m 38s
FASTQC docker NF-latest-everything
4m 6s
CAT_FASTQ docker NF-latest-everything
1m 5s
FQ_SUBSAMPLE docker NF-latest-everything
1m 4s
UMITOOLS_EXTRACT docker NF-latest-everything
1m 50s
TRIMGALORE docker NF-latest-everything
1m 59s
KALLISTO_INDEX docker NF-latest-everything
30s
UTILS_NFCORE_PIPELINE docker NF-latest-everything
1m 21s
CUSTOM_CATADDITIONALFASTA docker NF-latest-everything
47s
PREPROCESS_RNASEQ docker NF-latest-everything
1m 22s
SAMTOOLS_SORT docker NF-latest-everything
54s
BBMAP_BBSPLIT docker NF-latest-everything
45s
PIPELINE docker NF-latest-everything
24m 21s
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-latest-everything
1m 37s
BAM_STATS_SAMTOOLS docker NF-latest-everything
1m 45s
SALMON_QUANT docker NF-latest-everything
1m 9s
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-latest-everything
52s
SAMTOOLS_IDXSTATS docker NF-latest-everything
31s
RIBOTRICER_PREPAREORFS docker NF-latest-everything
1m 4s
RIBOTISH_QUALITY docker NF-latest-everything
1m 23s
BAM_SORT_STATS_SAMTOOLS docker NF-latest-everything
50s
SAMTOOLS_INDEX docker NF-latest-everything
49s
STAR_GENOMEGENERATE docker NF-latest-everything
1m 1s
CUTADAPT docker NF-latest-everything
44s
STAR_ALIGN docker NF-latest-everything
8m 19s
RIBOTRICER_DETECTORFS docker NF-latest-everything
3m 47s
GUNZIP docker NF-latest-everything
6m 35s
GFFREAD docker NF-latest-everything
45s
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-latest-everything
51s
HISAT2_BUILD docker NF-latest-everything
42s
MULTIQC docker NF-latest-everything
1m 19s
HISAT2_EXTRACTSPLICESITES docker NF-latest-everything
36s
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
1m 36s
UMITOOLS_PREPAREFORRSEM docker NF-latest-everything
1m 5s
SALMON_INDEX docker NF-latest-everything
36s
RSEM_PREPAREREFERENCE docker NF-latest-everything
1m 10s
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-latest-everything
47s
FASTP docker NF-latest-everything
2m 30s
UMITOOLS_DEDUP docker NF-latest-everything
1m 16s
SAMTOOLS_STATS docker NF-latest-everything
48s
UNTAR docker NF-latest-everything
37s
CUSTOM_GETCHROMSIZES docker NF-latest-everything
51s
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
58s
RIBOTISH_PREDICT docker NF-23.04
2m 31s
FASTQ_ALIGN_STAR docker NF-23.04
3m 8s
SAMTOOLS_FLAGSTAT docker NF-23.04
36s
SORTMERNA docker NF-23.04
2m 37s
FASTQC docker NF-23.04
3m 42s
CAT_FASTQ docker NF-23.04
1m 6s
FQ_SUBSAMPLE docker NF-23.04
1m 17s
UMITOOLS_EXTRACT docker NF-23.04
1m 52s
TRIMGALORE docker NF-23.04
1m 53s
KALLISTO_INDEX docker NF-23.04
37s
UTILS_NFCORE_PIPELINE docker NF-23.04
1m 23s
CUSTOM_CATADDITIONALFASTA docker NF-23.04
45s
PREPROCESS_RNASEQ docker NF-23.04
1m 36s
SAMTOOLS_SORT docker NF-23.04
48s
BBMAP_BBSPLIT docker NF-23.04
51s
PIPELINE docker NF-23.04
23m 25s
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04
1m 35s
BAM_STATS_SAMTOOLS docker NF-23.04
1m 35s
SALMON_QUANT docker NF-23.04
59s
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-23.04
44s
SAMTOOLS_IDXSTATS docker NF-23.04
47s
RIBOTRICER_PREPAREORFS docker NF-23.04
1m 1s
RIBOTISH_QUALITY docker NF-23.04
1m 10s
BAM_SORT_STATS_SAMTOOLS docker NF-23.04
44s
SAMTOOLS_INDEX docker NF-23.04
47s
STAR_GENOMEGENERATE docker NF-23.04
55s
CUTADAPT docker NF-23.04
42s
STAR_ALIGN docker NF-23.04
8m 7s
RIBOTRICER_DETECTORFS docker NF-23.04
3m 46s
GUNZIP docker NF-23.04
6m 24s
GFFREAD docker NF-23.04
53s
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-23.04
52s
HISAT2_BUILD docker NF-23.04
37s
MULTIQC docker NF-23.04
1m 17s
HISAT2_EXTRACTSPLICESITES docker NF-23.04
47s
UTILS_NEXTFLOW_PIPELINE docker NF-23.04
1m 10s
UMITOOLS_PREPAREFORRSEM docker NF-23.04
49s
SALMON_INDEX docker NF-23.04
34s
RSEM_PREPAREREFERENCE docker NF-23.04
44s
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-23.04
50s
FASTP docker NF-23.04
2m 10s
UMITOOLS_DEDUP docker NF-23.04
1m 9s
SAMTOOLS_STATS docker NF-23.04
58s
UNTAR docker NF-23.04
37s
CUSTOM_GETCHROMSIZES docker NF-23.04
43s
UTILS_NFVALIDATION_PLUGIN docker NF-23.04
51s
confirm-pass
1s
3h 8m 17s