Skip to content
nf-core CI

Ribotricer orf prediction #110

Sign in to view logs

Ribotricer orf prediction

Ribotricer orf prediction #110

Run time

Learn about OS pricing on GitHub Actions
Job Run time
Check for changes
7s
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-latest-everything
1m 1s
SAMTOOLS_SORT docker NF-latest-everything
1m 3s
CUSTOM_CATADDITIONALFASTA docker NF-latest-everything
33s
FQ_SUBSAMPLE docker NF-latest-everything
1m 18s
FASTP docker NF-latest-everything
2m 36s
KALLISTO_INDEX docker NF-latest-everything
42s
CUTADAPT docker NF-latest-everything
50s
RIBOTRICER_DETECTORFS docker NF-latest-everything
4m 26s
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
1m 33s
SORTMERNA docker NF-latest-everything
2m 43s
BAM_STATS_SAMTOOLS docker NF-latest-everything
1m 41s
UMITOOLS_EXTRACT docker NF-latest-everything
1m 56s
RIBOTISH_PREDICT docker NF-latest-everything
2m 30s
UMITOOLS_DEDUP docker NF-latest-everything
1m 15s
STAR_ALIGN docker NF-latest-everything
8m 32s
RIBOTRICER_PREPAREORFS docker NF-latest-everything
1m 22s
BAM_SORT_STATS_SAMTOOLS docker NF-latest-everything
54s
FASTQC docker NF-latest-everything
4m 10s
SALMON_INDEX docker NF-latest-everything
54s
SALMON_QUANT docker NF-latest-everything
1m 8s
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
56s
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-latest-everything
58s
UTILS_NFCORE_PIPELINE docker NF-latest-everything
1m 24s
HISAT2_EXTRACTSPLICESITES docker NF-latest-everything
56s
SAMTOOLS_IDXSTATS docker NF-latest-everything
47s
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-latest-everything
53s
MULTIQC docker NF-latest-everything
1m 36s
PREPROCESS_RNASEQ docker NF-latest-everything
1m 34s
UMITOOLS_PREPAREFORRSEM docker NF-latest-everything
1m 1s
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-latest-everything
1m 45s
SAMTOOLS_STATS docker NF-latest-everything
1m 18s
HISAT2_BUILD docker NF-latest-everything
41s
TRIMGALORE docker NF-latest-everything
2m 3s
BBMAP_BBSPLIT docker NF-latest-everything
50s
GFFREAD docker NF-latest-everything
46s
UNTAR docker NF-latest-everything
50s
GUNZIP docker NF-latest-everything
6m 28s
CAT_FASTQ docker NF-latest-everything
1m 17s
CUSTOM_GETCHROMSIZES docker NF-latest-everything
50s
PIPELINE docker NF-latest-everything
27m 24s
RIBOTISH_QUALITY docker NF-latest-everything
1m 14s
SAMTOOLS_INDEX docker NF-latest-everything
1m 3s
SAMTOOLS_FLAGSTAT docker NF-latest-everything
37s
RSEM_PREPAREREFERENCE docker NF-latest-everything
1m 0s
STAR_GENOMEGENERATE docker NF-latest-everything
1m 10s
FASTQ_ALIGN_STAR docker NF-latest-everything
3m 32s
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-23.04
53s
SAMTOOLS_SORT docker NF-23.04
51s
CUSTOM_CATADDITIONALFASTA docker NF-23.04
41s
FQ_SUBSAMPLE docker NF-23.04
1m 5s
FASTP docker NF-23.04
2m 18s
KALLISTO_INDEX docker NF-23.04
32s
CUTADAPT docker NF-23.04
48s
RIBOTRICER_DETECTORFS docker NF-23.04
3m 52s
UTILS_NEXTFLOW_PIPELINE docker NF-23.04
1m 14s
SORTMERNA docker NF-23.04
2m 33s
BAM_STATS_SAMTOOLS docker NF-23.04
1m 50s
UMITOOLS_EXTRACT docker NF-23.04
1m 57s
RIBOTISH_PREDICT docker NF-23.04
2m 17s
UMITOOLS_DEDUP docker NF-23.04
1m 15s
STAR_ALIGN docker NF-23.04
8m 6s
RIBOTRICER_PREPAREORFS docker NF-23.04
1m 8s
BAM_SORT_STATS_SAMTOOLS docker NF-23.04
53s
FASTQC docker NF-23.04
4m 6s
SALMON_INDEX docker NF-23.04
38s
SALMON_QUANT docker NF-23.04
1m 6s
UTILS_NFVALIDATION_PLUGIN docker NF-23.04
52s
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-23.04
47s
UTILS_NFCORE_PIPELINE docker NF-23.04
1m 28s
HISAT2_EXTRACTSPLICESITES docker NF-23.04
38s
SAMTOOLS_IDXSTATS docker NF-23.04
36s
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-23.04
51s
MULTIQC docker NF-23.04
1m 26s
PREPROCESS_RNASEQ docker NF-23.04
1m 23s
UMITOOLS_PREPAREFORRSEM docker NF-23.04
53s
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04
1m 43s
SAMTOOLS_STATS docker NF-23.04
1m 10s
HISAT2_BUILD docker NF-23.04
47s
TRIMGALORE docker NF-23.04
1m 51s
BBMAP_BBSPLIT docker NF-23.04
54s
GFFREAD docker NF-23.04
49s
UNTAR docker NF-23.04
45s
GUNZIP docker NF-23.04
6m 15s
CAT_FASTQ docker NF-23.04
1m 18s
CUSTOM_GETCHROMSIZES docker NF-23.04
44s
PIPELINE docker NF-23.04
26m 36s
RIBOTISH_QUALITY docker NF-23.04
1m 12s
SAMTOOLS_INDEX docker NF-23.04
52s
SAMTOOLS_FLAGSTAT docker NF-23.04
40s
RSEM_PREPAREREFERENCE docker NF-23.04
44s
STAR_GENOMEGENERATE docker NF-23.04
57s
FASTQ_ALIGN_STAR docker NF-23.04
3m 13s
confirm-pass
1s
3h 21m 35s