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Ribotricer orf prediction #119

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Ribotricer orf prediction

Ribotricer orf prediction #119

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Job Run time
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6s
SAMTOOLS_FLAGSTAT docker NF-latest-everything
36s
CUSTOM_CATADDITIONALFASTA docker NF-latest-everything
41s
RSEM_PREPAREREFERENCE docker NF-latest-everything
50s
FQ_SUBSAMPLE docker NF-latest-everything
1m 32s
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-latest-everything
52s
KALLISTO_INDEX docker NF-latest-everything
49s
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
1m 35s
SAMTOOLS_SORT docker NF-latest-everything
1m 0s
MULTIQC docker NF-latest-everything
1m 26s
CUTADAPT docker NF-latest-everything
53s
CUSTOM_GETCHROMSIZES docker NF-latest-everything
42s
HISAT2_BUILD docker NF-latest-everything
50s
RIBOTISH_PREDICT docker NF-latest-everything
3m 29s
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-latest-everything
2m 5s
SALMON_INDEX docker NF-latest-everything
42s
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
1m 8s
BAM_SORT_STATS_SAMTOOLS docker NF-latest-everything
51s
PIPELINE docker NF-latest-everything
26m 57s
BBMAP_BBSPLIT docker NF-latest-everything
58s
FASTP docker NF-latest-everything
2m 52s
SAMTOOLS_STATS docker NF-latest-everything
1m 58s
UTILS_NFCORE_PIPELINE docker NF-latest-everything
1m 27s
GFFREAD docker NF-latest-everything
1m 0s
RIBOTISH_QUALITY docker NF-latest-everything
1m 25s
GUNZIP docker NF-latest-everything
8m 53s
RIBOTRICER_PREPAREORFS docker NF-latest-everything
1m 44s
STAR_ALIGN docker NF-latest-everything
8m 26s
UNTAR docker NF-latest-everything
48s
FASTQC docker NF-latest-everything
4m 26s
UMITOOLS_EXTRACT docker NF-latest-everything
2m 5s
SAMTOOLS_IDXSTATS docker NF-latest-everything
49s
FASTQ_ALIGN_STAR docker NF-latest-everything
3m 24s
SORTMERNA docker NF-latest-everything
3m 3s
UMITOOLS_PREPAREFORRSEM docker NF-latest-everything
1m 8s
HISAT2_EXTRACTSPLICESITES docker NF-latest-everything
36s
STAR_GENOMEGENERATE docker NF-latest-everything
1m 11s
CAT_FASTQ docker NF-latest-everything
1m 21s
PREPROCESS_RNASEQ docker NF-latest-everything
1m 33s
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-latest-everything
48s
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-latest-everything
1m 4s
UMITOOLS_DEDUP docker NF-latest-everything
1m 20s
RIBOTRICER_DETECTORFS docker NF-latest-everything
4m 39s
TRIMGALORE docker NF-latest-everything
2m 12s
BAM_STATS_SAMTOOLS docker NF-latest-everything
2m 3s
SALMON_QUANT docker NF-latest-everything
1m 29s
SAMTOOLS_INDEX docker NF-latest-everything
1m 20s
SAMTOOLS_FLAGSTAT docker NF-23.04
47s
CUSTOM_CATADDITIONALFASTA docker NF-23.04
46s
RSEM_PREPAREREFERENCE docker NF-23.04
1m 0s
FQ_SUBSAMPLE docker NF-23.04
1m 23s
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-23.04
57s
KALLISTO_INDEX docker NF-23.04
45s
UTILS_NEXTFLOW_PIPELINE docker NF-23.04
1m 10s
SAMTOOLS_SORT docker NF-23.04
59s
MULTIQC docker NF-23.04
1m 30s
CUTADAPT docker NF-23.04
47s
CUSTOM_GETCHROMSIZES docker NF-23.04
55s
HISAT2_BUILD docker NF-23.04
46s
RIBOTISH_PREDICT docker NF-23.04
2m 47s
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04
1m 46s
SALMON_INDEX docker NF-23.04
42s
UTILS_NFVALIDATION_PLUGIN docker NF-23.04
1m 7s
BAM_SORT_STATS_SAMTOOLS docker NF-23.04
1m 0s
PIPELINE docker NF-23.04
26m 27s
BBMAP_BBSPLIT docker NF-23.04
1m 1s
FASTP docker NF-23.04
2m 43s
SAMTOOLS_STATS docker NF-23.04
56s
UTILS_NFCORE_PIPELINE docker NF-23.04
1m 14s
GFFREAD docker NF-23.04
43s
RIBOTISH_QUALITY docker NF-23.04
1m 55s
GUNZIP docker NF-23.04
10m 13s
RIBOTRICER_PREPAREORFS docker NF-23.04
2m 8s
STAR_ALIGN docker NF-23.04
8m 27s
UNTAR docker NF-23.04
47s
FASTQC docker NF-23.04
4m 26s
UMITOOLS_EXTRACT docker NF-23.04
1m 55s
SAMTOOLS_IDXSTATS docker NF-23.04
38s
FASTQ_ALIGN_STAR docker NF-23.04
3m 19s
SORTMERNA docker NF-23.04
3m 17s
UMITOOLS_PREPAREFORRSEM docker NF-23.04
53s
HISAT2_EXTRACTSPLICESITES docker NF-23.04
40s
STAR_GENOMEGENERATE docker NF-23.04
1m 9s
CAT_FASTQ docker NF-23.04
1m 28s
PREPROCESS_RNASEQ docker NF-23.04
1m 28s
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-23.04
1m 36s
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-23.04
59s
UMITOOLS_DEDUP docker NF-23.04
1m 21s
RIBOTRICER_DETECTORFS docker NF-23.04
7m 2s
TRIMGALORE docker NF-23.04
2m 5s
BAM_STATS_SAMTOOLS docker NF-23.04
1m 58s
SALMON_QUANT docker NF-23.04
1m 38s
SAMTOOLS_INDEX docker NF-23.04
55s
confirm-pass
1s
3h 43m 35s