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Empty ref to samtools sort #207

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Empty ref to samtools sort

Empty ref to samtools sort #207

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10s
modules/nf-core/fastp/tests/main.nf.test docker NF-latest-everything
2m 38s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-latest-everything
51s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything
56s
modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything
2m 2s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-latest-everything
53s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-latest-everything
45s
modules/nf-core/ribotish/quality/tests/main.nf.test docker NF-latest-everything
1m 54s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-latest-everything
1m 33s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything
1m 21s
modules/nf-core/star/align/tests/main.nf.test docker NF-latest-everything
8m 25s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
49s
tests/main.nf.test docker NF-latest-everything
28m 23s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything
1m 11s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-latest-everything
47s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything
1m 4s
subworkflows/nf-core/fastq_align_star/tests/main.nf.test docker NF-latest-everything
3m 30s
modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
1m 29s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything
55s
modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything
46s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-latest-everything
1m 9s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-latest-everything
1m 30s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-latest-everything
2m 58s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-latest-everything
43s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything
33s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything
1m 51s
modules/nf-core/cutadapt/tests/main.nf.test docker NF-latest-everything
38s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-latest-everything
2m 19s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything
1m 9s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-latest-everything
4m 54s
modules/nf-core/anota2seq/anota2seqrun/tests/main.nf.test docker NF-latest-everything
1m 30s
modules/nf-core/ribotish/predict/tests/main.nf.test docker NF-latest-everything
3m 9s
modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything
30s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-latest-everything
44s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-latest-everything
40s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
39s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-latest-everything
59s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-latest-everything
2m 33s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything
39s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything
59s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything
1m 13s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-latest-everything
59s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-latest-everything
29s
subworkflows/nf-core/preprocess_rnaseq/tests/main.nf.test docker NF-latest-everything
1m 45s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-latest-everything
1m 4s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-latest-everything
47s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-latest-everything
1m 25s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything
1m 9s
modules/nf-core/ribotricer/prepareorfs/tests/main.nf.test docker NF-latest-everything
1m 31s
modules/nf-core/gffread/tests/main.nf.test docker NF-latest-everything
46s
modules/nf-core/ribotricer/detectorfs/tests/main.nf.test docker NF-latest-everything
5m 56s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
26s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything
3m 24s
modules/nf-core/fastp/tests/main.nf.test docker NF-23.04
2m 20s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-23.04
49s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-23.04
50s
modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04
2m 5s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-23.04
53s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-23.04
38s
modules/nf-core/ribotish/quality/tests/main.nf.test docker NF-23.04
1m 33s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-23.04
1m 20s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-23.04
1m 15s
modules/nf-core/star/align/tests/main.nf.test docker NF-23.04
8m 31s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04
48s
tests/main.nf.test docker NF-23.04
28m 38s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-23.04
51s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-23.04
48s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-23.04
1m 21s
subworkflows/nf-core/fastq_align_star/tests/main.nf.test docker NF-23.04
3m 18s
modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04
1m 23s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04
53s
modules/nf-core/untar/tests/main.nf.test docker NF-23.04
45s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-23.04
1m 16s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-23.04
1m 7s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-23.04
2m 58s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-23.04
51s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-23.04
31s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-23.04
1m 59s
modules/nf-core/cutadapt/tests/main.nf.test docker NF-23.04
35s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-23.04
1m 57s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04
1m 3s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-23.04
4m 7s
modules/nf-core/anota2seq/anota2seqrun/tests/main.nf.test docker NF-23.04
1m 23s
modules/nf-core/ribotish/predict/tests/main.nf.test docker NF-23.04
2m 29s
modules/nf-core/gunzip/tests/main.nf.test docker NF-23.04
28s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-23.04
48s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-23.04
42s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04
51s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-23.04
52s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-23.04
1m 52s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-23.04
31s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-23.04
54s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-23.04
1m 5s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-23.04
1m 0s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-23.04
38s
subworkflows/nf-core/preprocess_rnaseq/tests/main.nf.test docker NF-23.04
1m 46s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-23.04
1m 0s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-23.04
36s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-23.04
51s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-23.04
47s
modules/nf-core/ribotricer/prepareorfs/tests/main.nf.test docker NF-23.04
1m 41s
modules/nf-core/gffread/tests/main.nf.test docker NF-23.04
46s
modules/nf-core/ribotricer/detectorfs/tests/main.nf.test docker NF-23.04
8m 24s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04
24s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-23.04
3m 0s
confirm-pass
1s
3h 39m 34s