Release nf-core/rnaseq v3.13.0 - Zinc Zebra · nf-core/rnaseq

What's Changed

Display a warning when '--extra_star_align_args' are used with RSEM by @MatthiasZepper in #1049
Update public_aws_ecr.config by @maxulysse in #1048
Remove public_aws_ecr profile by @adamrtalbot in #1051
Important! Template update for nf-core/tools v2.9 by @nf-core-bot in #1053
Update credits for subway map by @maxulysse in #1057
Use nf-validation plugin for parameter and samplesheet validation by @drpatelh in #1058
fix copy paste typo by @hmehlan in #1062
Update untar by @pinin4fjords in #1068
README.md: Added ref to downstream analyses by @smoe in #1060
Update the CODE_OF_CONDUCT and CONTRIBUTING with nf-core template 2.10 by @adamrtalbot in #1088
Reorganise arguments for clearer syntax by @adamrtalbot in #1091
Reorganise local modules into subfolder/main.nf for consistency by @adamrtalbot in #1083
Important! Template update for nf-core/tools v2.10 by @nf-core-bot in #1078
Update usage.md for igenomes warning by @pinin4fjords in #1073
Update all nf-core/modules in pipeline by @drpatelh in #1093
update config to enable usage of a custom config by @maxulysse in #1108
Kallisto quantification by @pinin4fjords in #1106
Expand GTF filtering to remove rows with empty transcript ID when required, fix STAR GTF usage by @pinin4fjords in #1107
Pre-release fixes for 3.13.0 by @pinin4fjords in #1114
Maxime feedback by @pinin4fjords in #1116
FIX: Subway map by @maxulysse in #1117
final updates on subway map by @maxulysse in #1120
Dev -> Master for 3.13.0 release by @drpatelh in #1113

Full Changelog: 3.12.0...3.13.0