change reference and resources used

nf-core · Apr 30, 2024 · e97e1c0 · e97e1c0
1 parent b64fa2d
commit e97e1c0
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/tests/main_pipeline_cellrangermulti.test b/tests/main_pipeline_cellrangermulti.test
@@ -14,14 +14,14 @@ nextflow_pipeline {
                 cellranger_multi_barcodes = "${baseDir}/assets/cellranger_barcodes_samplesheet.csv"
                 gex_frna_probe_set        = "${baseDir}/assets/frna_probeset_subset.csv"
                 fb_reference              = "${baseDir}/assets/fb_reference.csv"
-                fasta                     = 'https://ftp.ensembl.org/pub/release-110/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.chromosome.2.fa.gz'
+                fasta                     = 'https://ftp.ensembl.org/pub/release-110/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.chromosome.14.fa.gz'
                 gtf                       = 'https://ftp.ensembl.org/pub/release-110/gtf/homo_sapiens/Homo_sapiens.GRCh38.110.gtf.gz'
                 aligner                   = 'cellrangermulti'
                 protocol                  = 'auto'
 
                 // Limit resources so that this can run on GitHub Actions -- for some reason it had not been taken from shared config
-                max_cpus   = 2
-                max_memory = '6.GB'
+                max_cpus   = 4
+                max_memory = '14.GB'
                 max_time   = '6.h'
             }
         }