Fix #404

Fix for #404
nf-core · Sep 4, 2024 · 901f7b0 · 901f7b0
1 parent ba86791
commit 901f7b0
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/conf/modules.config b/conf/modules.config
@@ -146,7 +146,7 @@ process {
     //
 
     withName: '.*:UMICOLLAPSE_FASTQ' {
-        ext.args = { meta.single_end ? "--algo ${params.umitools_method} --two-pass" : "--method ${params.umitools_method} --two-pass --paired --remove-unpaired --remove-chimeric" }
+        ext.args = { meta.single_end ? "--algo ${params.umitools_method} --two-pass" : "--algo ${params.umitools_method} --two-pass --paired --remove-unpaired --remove-chimeric" }
         ext.prefix = { "${meta.id}.umi_dedup.sorted" }
         publishDir = [
             path: { "${params.outdir}/umi_dedup/bam_deduplicated" },