Update mirdeep2 publish_dir path

nf-core · Oct 18, 2023 · b59a73f · b59a73f
1 parent dd97948
commit b59a73f
Showing 1 changed file with 8 additions and 1 deletion.
diff --git a/conf/modules.config b/conf/modules.config
@@ -236,7 +236,14 @@ if (!params.skip_mirdeep) {
     process {
         withName: 'MIRDEEP2_MAPPER' {
             publishDir = [
-                path: { "${params.outdir}/mirdeep" },
+                path: { "${params.outdir}/mirdeep2/mapper" },
+                mode: params.publish_dir_mode,
+                saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
+            ]
+        }
+        withName: 'MIRDEEP2_RUN' {
+            publishDir = [
+                path: { "${params.outdir}/mirdeep2/run" },
                 mode: params.publish_dir_mode,
                 saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
             ]