add check if mirgene_db_species is set if mirgene_db

nf-core · Feb 14, 2024 · e35ff85 · e35ff85
1 parent 18ae224
commit e35ff85
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/workflows/smrnaseq.nf b/workflows/smrnaseq.nf
@@ -62,6 +62,7 @@ if (!params.mirgenedb) {
     if (params.mirgenedb_mature) { reference_mature = file(params.mirgenedb_mature, checkIfExists: true) } else { exit 1, "Mature miRNA fasta file not found: ${params.mirgenedb_mature}" }
     if (params.mirgenedb_hairpin) { reference_hairpin = file(params.mirgenedb_hairpin, checkIfExists: true) } else { exit 1, "Hairpin miRNA fasta file not found: ${params.mirgenedb_hairpin}" }
     if (params.mirgenedb_gff) { mirna_gtf = file(params.mirgenedb_gff, checkIfExists: true) } else { exit 1, "MirGeneDB gff file not found: ${params.mirgenedb_gff}"}
+    if (!params.mirgenedb_species) { exit 1, "MirGeneDB species not set, please specify via the --mirgenedb_species parameter"}
 }
 
 include { INPUT_CHECK                               } from '../subworkflows/local/input_check'