Add proper changelog updates

nf-core · Feb 22, 2024 · f7f6331 · f7f6331
1 parent 761b71c
commit f7f6331
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Showing 8 changed files with 34 additions and 53 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -44,7 +44,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 | `seqkit`      | 2.3.1       | 2.6.1       |
 | `fastqc`      | 0.11.4      | 0.12.1      |
 | `samtools`    | 1.17        | 1.19.2      |
-| `umitools`    | <none>      | 1.1.4       |
+| `umitools`    | <none>      | 1.1.5       |
 | `umicollapse` | <none>      | 1.0.0       |
 
 ## [v2.2.4](https://github.com/nf-core/smrnaseq/releases/tag/2.2.4) - 2023-11-03

diff --git a/modules.json b/modules.json
@@ -12,12 +12,7 @@
                     },
                     "cat/fastq": {
                         "branch": "master",
-                        "git_sha": "02fd5bd7275abad27aad32d5c852e0a9b1b98882",
-                        "installed_by": ["modules"]
-                    },
-                    "custom/dumpsoftwareversions": {
-                        "branch": "master",
-                        "git_sha": "de45447d060b8c8b98575bc637a4a575fd0638e1",
+                        "git_sha": "0997b47c93c06b49aa7b3fefda87e728312cf2ca",
                         "installed_by": ["modules"]
                     },
                     "fastp": {
@@ -62,12 +57,12 @@
                     },
                     "umicollapse": {
                         "branch": "master",
-                        "git_sha": "2e561f4551ce3df2bc60016f7ea359f2ed4bce49",
+                        "git_sha": "ba3f3df395d2719dcef5c67189042a1dc555c701",
                         "installed_by": ["modules"]
                     },
                     "umitools/extract": {
                         "branch": "master",
-                        "git_sha": "9e56d7a647fbf6f7e45ef123bc916ad66b6f7c9d",
+                        "git_sha": "ff7e93715a2acecf3f143ec78c9858deba2984d0",
                         "installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
                     },
                     "untarfiles": {
@@ -79,44 +74,11 @@
             },
             "subworkflows": {
                 "nf-core": {
-                    "bam_sort_stats_samtools": {
-                        "branch": "master",
-                        "git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
-                        "installed_by": ["subworkflows"]
-                    },
-                    "bam_stats_samtools": {
-                        "branch": "master",
-                        "git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
-                        "installed_by": ["bam_sort_stats_samtools", "subworkflows"]
-                    },
                     "fastq_fastqc_umitools_fastp": {
                         "branch": "master",
                         "git_sha": "003920c7f9a8ae19b69a97171922880220bedf56",
                         "installed_by": ["subworkflows"]
-                    }
-                }
-            },
-            "subworkflows": {
-                "nf-core": {
-                    "utils_nextflow_pipeline": {
-                        "branch": "master",
-                        "git_sha": "cd08c91373cd00a73255081340e4914485846ba1",
-                        "installed_by": ["subworkflows"]
-                    },
-                    "utils_nfcore_pipeline": {
-                        "branch": "master",
-                        "git_sha": "262b17ed2aad591039f914951659177e6c39a8d8",
-                        "installed_by": ["subworkflows"]
                     },
-                    "utils_nfvalidation_plugin": {
-                        "branch": "master",
-                        "git_sha": "cd08c91373cd00a73255081340e4914485846ba1",
-                        "installed_by": ["subworkflows"]
-                    }
-                }
-            },
-            "subworkflows": {
-                "nf-core": {
                     "utils_nextflow_pipeline": {
                         "branch": "master",
                         "git_sha": "cd08c91373cd00a73255081340e4914485846ba1",

diff --git a/modules/nf-core/cat/fastq/environment.yml b/modules/nf-core/cat/fastq/environment.yml
diff --git a/modules/nf-core/cat/fastq/main.nf b/modules/nf-core/cat/fastq/main.nf
diff --git a/modules/nf-core/umicollapse/tests/main.nf.test.snap b/modules/nf-core/umicollapse/tests/main.nf.test.snap
diff --git a/modules/nf-core/umitools/extract/environment.yml b/modules/nf-core/umitools/extract/environment.yml
diff --git a/modules/nf-core/umitools/extract/main.nf b/modules/nf-core/umitools/extract/main.nf
diff --git a/modules/nf-core/umitools/extract/tests/main.nf.test.snap b/modules/nf-core/umitools/extract/tests/main.nf.test.snap