Release PR for 2.2.2 Patch Release #277
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Remove glob from process definition when using ECR container
Remove public_aws_ecr profile
in the configuration files and docs. Signed-off-by: Rob Syme <rob.syme@gmail.com>
Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
Co-authored-by: Christopher Mohr <contact.cmohr@gmail.com>
Attempt at introducing meta2 everywhere
Update Mirbase URLs structure to match their new structure
Merge-template-2.9 & mirbase fixes
apeltzer
requested review from
robsyme,
maxulysse,
christopher-mohr and
grst
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jfy133
reviewed
Sep 1, 2023
CHANGELOG.md
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| @@ -3,7 +3,16 @@ | |||
| The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) | |||
| and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). | |||
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| ## [v2.2.1](https://github.com/nf-core/smrnaseq/releases/tag/2.2.1) - 2023-05-08 | |||
| ## dev | |||
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Jumping ahead if this is a patch release?
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Missing version bumps for multiQC and fasto for example
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Missing updates to paths for one of the tools (and removing .gz)
christopher-mohr
requested changes
Sep 4, 2023
grst
approved these changes
Sep 4, 2023
maxulysse
reviewed
Sep 4, 2023
Co-authored-by: Christopher Mohr <contact.cmohr@gmail.com>
Co-authored-by: Christopher Mohr <contact.cmohr@gmail.com>
Adjust bits from PR review
apeltzer
commented
Sep 4, 2023
Bugfix for users who are running offline / with -all distribution as seen in discussion with @bentsherman nextflow-io/nextflow#4126
christopher-mohr
approved these changes
Sep 5, 2023
subworkflows/local/genome_quant.nf
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| include { BOWTIE_MAP_SEQ as BOWTIE_MAP_GENOME } from '../../modules/local/bowtie_map_mirna' | ||
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| workflow GENOME_QUANT { | ||
| take: | ||
| fasta | ||
| fasta |
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PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).