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Upgrade modules to latest versions prior to release #316

Merged
merged 6 commits into from
Feb 15, 2024
Merged

Upgrade modules to latest versions prior to release #316

merged 6 commits into from
Feb 15, 2024

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apeltzer
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/smrnaseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Feb 14, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit cbee5e7

+| ✅ 183 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

❔ Tests ignored:

  • nextflow_config - Config default ignored: params.fastp_known_mirna_adapters

✅ Tests passed:

Run details

  • nf-core/tools version 2.12.1
  • Run at 2024-02-15 13:17:02

@apeltzer apeltzer changed the title Upgrade modules accordingly Upgrade modules to latest versions prior to release Feb 15, 2024
@apeltzer apeltzer merged commit 6ea0aad into dev Feb 15, 2024
8 checks passed
@apeltzer apeltzer deleted the bump-modules branch February 29, 2024 08:33
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@apeltzer