Template: add option to exclude fastqc from pipeline template #7572
mirpedrolAnnotations
6 errors and 103 warnings
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Run modules/test_bump_versions.py with Python 3.12 on ubuntu-latest
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Run modules/test_lint.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_create_app.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_create_app.py with Python 3.12 on ubuntu-latest
The artifact name is not valid: Snapshot Report pipelines/test_create_app.py. Contains the following character: Forward slash /
Invalid characters include: Double quote ", Colon :, Less than <, Greater than >, Vertical bar |, Asterisk *, Question mark ?, Carriage return \r, Line feed \n, Backslash \, Forward slash /
These characters are not allowed in the artifact name due to limitations with certain file systems such as NTFS. To maintain file system agnostic behavior, these characters are intentionally not allowed to prevent potential problems with downloads on different file systems.
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Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
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Run test_components.py with Python 3.12 on ubuntu-latest
no submodule mapping found in .gitmodules for path 'tmp/pytest-of-gitpod/pytest-0/test_github_details0'
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Get test file matrix
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Run pipelines/lint/test_actions_awsfulltest.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_actions_awsfulltest.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_nfcore_yml.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_nfcore_yml.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_modules_json.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_modules_json.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_configs.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_actions_awstest.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_actions_awstest.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_merge_markers.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_merge_markers.py with Python 3.12 on ubuntu-latest
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Run modules/test_remove.py with Python 3.12 on ubuntu-latest
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Run modules/test_info.py with Python 3.12 on ubuntu-latest
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Run modules/test_info.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_actions_schema_validation.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_actions_schema_validation.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_multiqc_config.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_multiqc_config.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_actions_ci.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_files_exist.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_files_exist.py with Python 3.12 on ubuntu-latest
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Run modules/test_bump_versions.py with Python 3.12 on ubuntu-latest
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Run modules/test_bump_versions.py with Python 3.12 on ubuntu-latest
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Run modules/test_create.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_nextflow_config.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_nextflow_config.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_list.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_list.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_version_consistency.py with Python 3.12 on ubuntu-latest
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Run pipelines/lint/test_version_consistency.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_params_file.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_params_file.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_create_logo.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_create_logo.py with Python 3.12 on ubuntu-latest
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Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
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Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_bump_version.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_bump_version.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_create.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_create.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_refgenie.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_refgenie.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_download.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_download.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_lint.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_lint.py with Python 3.12 on ubuntu-latest
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Run subworkflows/test_create.py with Python 3.12 on ubuntu-latest
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Run subworkflows/test_create.py with Python 3.12 on ubuntu-latest
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Run test_pipelines.py with Python 3.12 on ubuntu-latest
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Run modules/test_update.py with Python 3.12 on ubuntu-latest
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Run test_subworkflows.py with Python 3.12 on ubuntu-latest
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Run test_subworkflows.py with Python 3.12 on ubuntu-latest
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Run test_cli.py with Python 3.12 on ubuntu-latest
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Run test_cli.py with Python 3.12 on ubuntu-latest
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Run test_lint_utils.py with Python 3.12 on ubuntu-latest
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Run test_lint_utils.py with Python 3.12 on ubuntu-latest
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Run subworkflows/test_info.py with Python 3.12 on ubuntu-latest
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Run subworkflows/test_info.py with Python 3.12 on ubuntu-latest
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Run test_test_utils.py with Python 3.12 on ubuntu-latest
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Run test_test_utils.py with Python 3.12 on ubuntu-latest
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Run modules/test_lint.py with Python 3.12 on ubuntu-latest
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Run modules/test_lint.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_create_app.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
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Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
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Run test_modules.py with Python 3.12 on ubuntu-latest
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Run test_modules.py with Python 3.12 on ubuntu-latest
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Run subworkflows/test_list.py with Python 3.12 on ubuntu-latest
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Run subworkflows/test_list.py with Python 3.12 on ubuntu-latest
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Run test_utils.py with Python 3.12 on ubuntu-latest
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Run test_utils.py with Python 3.12 on ubuntu-latest
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Run subworkflows/test_install.py with Python 3.12 on ubuntu-latest
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Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
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Artifacts
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coverage_modules__test_create.py
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5.57 KB |
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coverage_modules__test_info.py
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5.71 KB |
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coverage_modules__test_install.py
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5.64 KB |
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coverage_modules__test_list.py
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coverage_modules__test_modules_json.py
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coverage_modules__test_patch.py
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coverage_modules__test_remove.py
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coverage_modules__test_update.py
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5.89 KB |
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coverage_pipelines__lint__test_actions_awsfulltest.py
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6.37 KB |
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coverage_pipelines__lint__test_actions_awstest.py
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6.36 KB |
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coverage_pipelines__lint__test_actions_ci.py
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6.36 KB |
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coverage_pipelines__lint__test_actions_schema_validation.py
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6.37 KB |
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coverage_pipelines__lint__test_configs.py
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coverage_pipelines__lint__test_files_exist.py
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coverage_pipelines__lint__test_files_unchanged.py
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coverage_pipelines__lint__test_merge_markers.py
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coverage_pipelines__lint__test_modules_json.py
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coverage_pipelines__lint__test_multiqc_config.py
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coverage_pipelines__lint__test_nextflow_config.py
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coverage_pipelines__lint__test_nfcore_yml.py
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6.37 KB |
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coverage_pipelines__lint__test_template_strings.py
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6.65 KB |
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coverage_pipelines__lint__test_version_consistency.py
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6.41 KB |
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coverage_pipelines__test_bump_version.py
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coverage_pipelines__test_create.py
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coverage_pipelines__test_create_logo.py
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coverage_pipelines__test_download.py
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coverage_pipelines__test_launch.py
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coverage_pipelines__test_lint.py
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6.81 KB |
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coverage_pipelines__test_list.py
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coverage_pipelines__test_params_file.py
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coverage_pipelines__test_refgenie.py
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coverage_pipelines__test_schema.py
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coverage_pipelines__test_sync.py
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coverage_subworkflows__test_create.py
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coverage_subworkflows__test_info.py
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6.52 KB |
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coverage_subworkflows__test_install.py
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coverage_subworkflows__test_list.py
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coverage_subworkflows__test_remove.py
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coverage_subworkflows__test_update.py
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6.61 KB |
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coverage_test_cli.py
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6.8 KB |
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coverage_test_components.py
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5.33 KB |
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coverage_test_lint_utils.py
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4.94 KB |
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coverage_test_modules.py
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5.56 KB |
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coverage_test_pipelines.py
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4.95 KB |
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coverage_test_subworkflows.py
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6.24 KB |
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coverage_test_test_utils.py
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4.95 KB |
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coverage_test_utils.py
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