Template: add option to exclude fastqc from pipeline template #7573
mirpedrolAnnotations
2 errors and 102 warnings
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Run pipelines/test_create_app.py with Python 3.8 on ubuntu-20.04
Process completed with exit code 1.
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Run pipelines/test_create_app.py with Python 3.8 on ubuntu-20.04
The artifact name is not valid: Snapshot Report pipelines/test_create_app.py. Contains the following character: Forward slash /
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These characters are not allowed in the artifact name due to limitations with certain file systems such as NTFS. To maintain file system agnostic behavior, these characters are intentionally not allowed to prevent potential problems with downloads on different file systems.
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Get test file matrix
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Run pipelines/test_create.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_create.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_list.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_list.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_actions_awstest.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_actions_awstest.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_params_file.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_params_file.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_merge_markers.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_merge_markers.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_modules_json.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_modules_json.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_version_consistency.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_version_consistency.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_files_unchanged.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_files_unchanged.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_configs.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_configs.py with Python 3.8 on ubuntu-20.04
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Run modules/test_info.py with Python 3.8 on ubuntu-20.04
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Run modules/test_info.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_create_logo.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_create_logo.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_actions_ci.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_actions_ci.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_template_strings.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_template_strings.py with Python 3.8 on ubuntu-20.04
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Run modules/test_remove.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_actions_schema_validation.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_actions_schema_validation.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_files_exist.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_files_exist.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_actions_awsfulltest.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_actions_awsfulltest.py with Python 3.8 on ubuntu-20.04
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Run modules/test_bump_versions.py with Python 3.8 on ubuntu-20.04
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Run modules/test_bump_versions.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_nfcore_yml.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_nfcore_yml.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_bump_version.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_bump_version.py with Python 3.8 on ubuntu-20.04
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Run modules/test_install.py with Python 3.8 on ubuntu-20.04
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Run modules/test_install.py with Python 3.8 on ubuntu-20.04
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Run modules/test_list.py with Python 3.8 on ubuntu-20.04
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Run modules/test_list.py with Python 3.8 on ubuntu-20.04
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Run modules/test_patch.py with Python 3.8 on ubuntu-20.04
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Run modules/test_patch.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_download.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_download.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_lint.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_lint.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_multiqc_config.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_multiqc_config.py with Python 3.8 on ubuntu-20.04
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Run modules/test_create.py with Python 3.8 on ubuntu-20.04
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Run modules/test_create.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_nextflow_config.py with Python 3.8 on ubuntu-20.04
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Run pipelines/lint/test_nextflow_config.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_launch.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_launch.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_create_app.py with Python 3.8 on ubuntu-20.04
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Run modules/test_modules_json.py with Python 3.8 on ubuntu-20.04
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Run modules/test_modules_json.py with Python 3.8 on ubuntu-20.04
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Run test_cli.py with Python 3.8 on ubuntu-20.04
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Run test_pipelines.py with Python 3.8 on ubuntu-20.04
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Run modules/test_update.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_refgenie.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_refgenie.py with Python 3.8 on ubuntu-20.04
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Run test_subworkflows.py with Python 3.8 on ubuntu-20.04
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Run test_subworkflows.py with Python 3.8 on ubuntu-20.04
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Run test_test_utils.py with Python 3.8 on ubuntu-20.04
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Run test_test_utils.py with Python 3.8 on ubuntu-20.04
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Run subworkflows/test_create.py with Python 3.8 on ubuntu-20.04
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Run subworkflows/test_create.py with Python 3.8 on ubuntu-20.04
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Run test_modules.py with Python 3.8 on ubuntu-20.04
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Run test_modules.py with Python 3.8 on ubuntu-20.04
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Run test_lint_utils.py with Python 3.8 on ubuntu-20.04
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Run test_lint_utils.py with Python 3.8 on ubuntu-20.04
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Run subworkflows/test_list.py with Python 3.8 on ubuntu-20.04
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Run subworkflows/test_list.py with Python 3.8 on ubuntu-20.04
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Run subworkflows/test_info.py with Python 3.8 on ubuntu-20.04
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Run subworkflows/test_info.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_sync.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_sync.py with Python 3.8 on ubuntu-20.04
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Run subworkflows/test_remove.py with Python 3.8 on ubuntu-20.04
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Run test_utils.py with Python 3.8 on ubuntu-20.04
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Run subworkflows/test_install.py with Python 3.8 on ubuntu-20.04
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Run subworkflows/test_install.py with Python 3.8 on ubuntu-20.04
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Run modules/test_lint.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_schema.py with Python 3.8 on ubuntu-20.04
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Run pipelines/test_schema.py with Python 3.8 on ubuntu-20.04
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Run subworkflows/test_lint.py with Python 3.8 on ubuntu-20.04
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Run test_components.py with Python 3.8 on ubuntu-20.04
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Artifacts
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coverage_modules__test_bump_versions.py
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5.62 KB |
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coverage_modules__test_create.py
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5.57 KB |
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coverage_modules__test_info.py
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5.7 KB |
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coverage_modules__test_install.py
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5.64 KB |
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coverage_modules__test_lint.py
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6.84 KB |
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coverage_modules__test_list.py
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5.68 KB |
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coverage_modules__test_modules_json.py
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5.76 KB |
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coverage_modules__test_patch.py
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5.84 KB |
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coverage_modules__test_remove.py
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5.66 KB |
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coverage_modules__test_update.py
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5.88 KB |
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coverage_pipelines__lint__test_actions_awsfulltest.py
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6.35 KB |
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coverage_pipelines__lint__test_actions_awstest.py
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6.35 KB |
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coverage_pipelines__lint__test_actions_ci.py
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6.35 KB |
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coverage_pipelines__lint__test_actions_schema_validation.py
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6.35 KB |
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coverage_pipelines__lint__test_configs.py
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6.35 KB |
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coverage_pipelines__lint__test_files_exist.py
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6.36 KB |
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coverage_pipelines__lint__test_files_unchanged.py
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6.37 KB |
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coverage_pipelines__lint__test_merge_markers.py
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6.35 KB |
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coverage_pipelines__lint__test_modules_json.py
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6.35 KB |
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coverage_pipelines__lint__test_multiqc_config.py
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6.39 KB |
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coverage_pipelines__lint__test_nextflow_config.py
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6.39 KB |
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coverage_pipelines__lint__test_nfcore_yml.py
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6.35 KB |
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coverage_pipelines__lint__test_template_strings.py
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6.64 KB |
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coverage_pipelines__lint__test_version_consistency.py
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6.4 KB |
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coverage_pipelines__test_bump_version.py
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5.1 KB |
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coverage_pipelines__test_create.py
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5.06 KB |
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coverage_pipelines__test_create_logo.py
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5.07 KB |
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coverage_pipelines__test_download.py
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coverage_pipelines__test_launch.py
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5.24 KB |
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coverage_pipelines__test_lint.py
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6.8 KB |
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coverage_pipelines__test_list.py
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4.97 KB |
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coverage_pipelines__test_params_file.py
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5.14 KB |
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coverage_pipelines__test_refgenie.py
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5 KB |
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coverage_pipelines__test_schema.py
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5.16 KB |
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coverage_pipelines__test_sync.py
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5.17 KB |
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coverage_subworkflows__test_create.py
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6.4 KB |
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coverage_subworkflows__test_info.py
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6.5 KB |
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coverage_subworkflows__test_install.py
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6.46 KB |
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coverage_subworkflows__test_lint.py
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6.62 KB |
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coverage_subworkflows__test_list.py
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6.49 KB |
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coverage_subworkflows__test_remove.py
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6.46 KB |
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coverage_subworkflows__test_update.py
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6.59 KB |
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coverage_test_cli.py
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6.78 KB |
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coverage_test_components.py
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5.33 KB |
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coverage_test_lint_utils.py
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4.94 KB |
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coverage_test_modules.py
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5.55 KB |
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coverage_test_pipelines.py
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4.95 KB |
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coverage_test_subworkflows.py
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6.23 KB |
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coverage_test_test_utils.py
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4.95 KB |
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coverage_test_utils.py
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5.11 KB |
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