nf-core pipeline lint gives cryptic prettier error message #103
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| name: Update Textual snapshots from a comment | |
| on: | |
| issue_comment: | |
| types: [created] | |
| jobs: | |
| update-snapshots: | |
| # Only run if comment is on a PR with the main repo, and if it contains the magic keywords | |
| if: > | |
| contains(github.event.comment.html_url, '/pull/') && | |
| contains(github.event.comment.body, '@nf-core-bot update snapshots') && | |
| github.repository == 'nf-core/tools' | |
| runs-on: ubuntu-latest | |
| steps: | |
| # Use the @nf-core-bot token to check out so we can push later | |
| - uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4 | |
| with: | |
| token: ${{ secrets.nf_core_bot_auth_token }} | |
| # indication that the command is running | |
| - name: React on comment | |
| uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4 | |
| with: | |
| comment-id: ${{ github.event.comment.id }} | |
| reactions: eyes | |
| # Action runs on the issue comment, so we don't get the PR by default | |
| # Use the gh cli to check out the PR | |
| - name: Checkout Pull Request | |
| run: gh pr checkout ${{ github.event.issue.number }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }} | |
| # Install dependencies and run pytest | |
| - name: Set up Python | |
| uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 | |
| with: | |
| python-version: "3.12" | |
| cache: "pip" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip -r requirements-dev.txt | |
| pip install -e . | |
| - name: Run pytest to update snapshots | |
| id: pytest | |
| run: | | |
| python3 -m pytest tests/test_create_app.py --snapshot-update --color=yes --durations=0 | |
| continue-on-error: true | |
| # indication that the run has finished | |
| - name: react if finished succesfully | |
| if: steps.pytest.outcome == 'success' | |
| uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4 | |
| with: | |
| comment-id: ${{ github.event.comment.id }} | |
| reactions: "+1" | |
| - name: Commit & push changes | |
| id: commit-and-push | |
| if: steps.pytest.outcome == 'failure' | |
| run: | | |
| git config user.email "core@nf-co.re" | |
| git config user.name "nf-core-bot" | |
| git config push.default upstream | |
| git add . | |
| git status | |
| git commit -m "[automated] Update Textual snapshots" | |
| git push | |
| - name: react if snapshots were updated | |
| id: react-if-updated | |
| if: steps.commit-and-push.outcome == 'success' | |
| uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4 | |
| with: | |
| comment-id: ${{ github.event.comment.id }} | |
| reactions: hooray | |
| - name: react if snapshots were not updated | |
| if: steps.commit-and-push.outcome == 'failure' | |
| uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4 | |
| with: | |
| comment-id: ${{ github.event.comment.id }} | |
| reactions: confused | |
| - name: react if snapshots were not updated | |
| if: steps.commit-and-push.outcome == 'failure' | |
| uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4 | |
| with: | |
| issue-number: ${{ github.event.issue.number }} | |
| body: | | |
| @${{ github.actor }} I tried to update the snapshots, but it didn't work. Please update them manually. |