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test -> test_name
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maxulysse committed Oct 10, 2024
1 parent eb2be9a commit 1c8d74b
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions nf_core/pipeline-template/.github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ concurrency:

jobs:
test:
name: "Run pipeline with test data ({% raw %}${{ matrix.NXF_VER }}{% endraw %} | {% raw %}${{ matrix.test }}{% endraw %} | {% raw %}${{ matrix.profile }}{% endraw %})"
name: "Run pipeline with test data ({% raw %}${{ matrix.NXF_VER }}{% endraw %} | {% raw %}${{ matrix.test_name }}{% endraw %} | {% raw %}${{ matrix.profile }}{% endraw %})"
# Only run on push if this is the nf-core dev branch (merged PRs)
if: "{% raw %}${{{% endraw %} github.event_name != 'push' || (github.event_name == 'push' && github.repository == '{{ name }}') {% raw %}}}{% endraw %}"
runs-on: ubuntu-latest
Expand All @@ -33,7 +33,7 @@ jobs:
- "conda"
- "docker"
- "singularity"
test:
test_name:
# TODO nf-core: You can customise CI pipeline run tests as required
- "test"
isMaster:
Expand Down Expand Up @@ -83,6 +83,6 @@ jobs:
- name: Clean up Disk space
uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1

- name: "Run pipeline with test data {% raw %}${{ matrix.NXF_VER }}{% endraw %} | {% raw %}${{ matrix.test }}{% endraw %} | {% raw %}${{ matrix.profile }}{% endraw %}"
- name: "Run pipeline with test data {% raw %}${{ matrix.NXF_VER }}{% endraw %} | {% raw %}${{ matrix.test_name }}{% endraw %} | {% raw %}${{ matrix.profile }}{% endraw %}"
run: |
nextflow run ${GITHUB_WORKSPACE} -profile {% raw %}${{ matrix.test }}{% endraw %},{% raw %}${{ matrix.profile }}{% endraw %} --outdir ./results
nextflow run ${GITHUB_WORKSPACE} -profile {% raw %}${{ matrix.test_name }}{% endraw %},{% raw %}${{ matrix.profile }}{% endraw %} --outdir ./results

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