Merge pull request #2615 from nf-core/dev

Dev -> Master for 2.11.1

.github/workflows/rich-codex.yml

@@ -17,6 +17,21 @@ jobs:
       - name: Install Nextflow
         uses: nf-core/setup-nextflow@v1
 
+      - name: Cache nf-test installation
+        id: cache-software
+        uses: actions/cache@v3
+        with:
+          path: |
+            /usr/local/bin/nf-test
+            /home/runner/.nf-test/nf-test.jar
+          key: ${{ runner.os }}-nftest-${{ env.date }}
+
+      - name: Install nf-test
+        if: steps.cache-software.outputs.cache-hit != 'true'
+        run: |
+          wget -qO- https://code.askimed.com/install/nf-test | bash
+          sudo mv nf-test /usr/local/bin/
+
       - name: Install nf-core/tools
         run: pip install git+https://github.com/nf-core/tools.git@dev
 

CHANGELOG.md

@@ -1,6 +1,17 @@
 # nf-core/tools: Changelog
 
-# [v2.11 - Magnesium Dragon](https://github.com/nf-core/tools/releases/tag/2.11) + [2023-12-19]
+# [v2.11.1 - Magnesium Dragon Patch](https://github.com/nf-core/tools/releases/tag/2.11) - [2023-12-20]
+
+### Template
+
+- Rename `release-announcments.yml` to `release-announcements.yml` ([#2610](https://github.com/nf-core/tools/pull/2610))
+- Fix `nextflow.config` `docker.runOptions` ([#2607](https://github.com/nf-core/tools/pull/2607))
+
+### General
+
+- Only dump `modules.json` when it is modified ([#2609](https://github.com/nf-core/tools/pull/2609))
+
+# [v2.11 - Magnesium Dragon](https://github.com/nf-core/tools/releases/tag/2.11) - [2023-12-19]
 
 ### Template
 

README.md

@@ -900,7 +900,7 @@ If you want to make a minor change to a locally installed module but still keep
 
 <!-- RICH-CODEX
 working_dir: tmp/nf-core-nextbigthing
-before_command:  sed "s/process_medium/process_low/g" modules/nf-core/modules/fastqc/main.nf > modules/nf-core/modules/fastqc/main.nf.patch && mv modules/nf-core/modules/fastqc/main.nf.patch modules/nf-core/modules/fastqc/main.nf
+before_command:  sed "s/process_medium/process_low/g" modules/nf-core/fastqc/main.nf > modules/nf-core/fastqc/main.nf.patch && mv modules/nf-core/fastqc/main.nf.patch modules/nf-core/fastqc/main.nf
 -->
 
 ![`nf-core modules patch fastqc`](docs/images/nf-core-modules-patch.svg)
@@ -965,7 +965,7 @@ extra_env:
   PROFILE: 'conda'
 -->
 
-![`nf-core modules test fastqc --no-prompts --force`](docs/images/nf-core-modules-test.svg)
+![`nf-core modules test fastqc --no-prompts`](docs/images/nf-core-modules-test.svg)
 
 In case you changed something in the test and want to update the snapshot, run
 
@@ -1076,6 +1076,9 @@ This shows documentation about the subworkflow on the command line, similar to w
 working_dir: tmp/nf-core-nextbigthing
 before_command: >
   echo "repository_type: pipeline" >> .nf-core.yml
+
+head: 15
+tail: 10
 -->
 
 ![`nf-core subworkflows info bam_rseqc`](docs/images/nf-core-subworkflows-info.svg)