Revert "don't remove base.config when removing nf-core components"

This reverts commit 68dab6e.
nf-core · Aug 27, 2024 · 6a5d830 · 6a5d830
1 parent bed7b37
commit 6a5d830
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diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config
@@ -66,8 +66,10 @@ params {
     validate_params            = true
 
 }
+{% if modules %}
 // Load base.config by default for all pipelines
 includeConfig 'conf/base.config'
+{% endif %}
 {% if nf_core_configs -%}
 // Load nf-core custom profiles from different Institutions
 try {

diff --git a/nf_core/pipelines/create/templatefeatures.yml b/nf_core/pipelines/create/templatefeatures.yml
@@ -244,6 +244,7 @@ fastqc:
   custom_pipelines: True
 modules:
   skippable_paths:
+    - "conf/base.config"
     - "conf/modules.config"
     - "modules.json"
     - "modules"
@@ -259,6 +260,7 @@ modules:
     base_config: False
     modules_config: False
     files_exist:
+      - "conf/base.config"
       - "conf/modules.config"
       - "modules.json"
     nextflow_config: