nf-core tools bump-version command does not preserve formatting

[fabianegli]

Description of feature

When running nf-core bump-version 1.1.0 I get the following diff:

% git diff
diff --git a/nextflow.config b/nextflow.config
index ee0fca4..c249288 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -366,7 +366,7 @@ manifest {
     description     = """Quantitative Mass Spectrometry nf-core workflow"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=22.10.1'
-    version         = '1.1dev'
+    version = '1.1.0'
     doi             = ''
 }

but would expect

% git diff
diff --git a/nextflow.config b/nextflow.config
index ee0fca4..c249288 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -366,7 +366,7 @@ manifest {
     description     = """Quantitative Mass Spectrometry nf-core workflow"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=22.10.1'
-    version         = '1.1dev'
+    version         = '1.1.0'
     doi             = ''
 }

instead.

[fabianegli]

Sorry for the dupe 🤭 @maxulysse

[maxulysse]

Sorry for the dupe 🤭 @maxulysse

no worries, it happens to the best ;-)

[fabianegli]

Closing as fixed in #2514