Added -profile wave to the template.

[ewels]

Add a config profile in the template to use Wave.

Note

Requires 24.03.0-edge! I considered bumping nextflowVersion to 24.04.0 but it feels a bit overkill when the vast majority of end users will not be using -profile wave. I'm inclined to mention this in the docs but not encode it in the config. Please shout if you disagree.

Will need more docs about Wave, but that's a larger effort, probably for the website repo.

PR checklist

• This comment contains a description of changes (with reason)
• CHANGELOG.md is updated
• If you've fixed a bug or added code that should be tested, add tests!
• Documentation in docs is updated

[ewels]

If someone could add this into upstream pipelines to be sure we're not going to hit any unexpected errors, that'd be fab.

Maybe Sarek @maxulysse @FriederikeHanssen, and rnaseq someone else, at least?

[maxulysse]

<3

[maxulysse]

If someone could add this into upstream pipelines to be sure we're not going to hit any unexpected errors, that'd be fab.

Maybe Sarek @maxulysse @FriederikeHanssen, and rnaseq someone else, at least?

I'll have a look at adding that in both in POC PR

[maxulysse]

nextflow run . -profile test,wave --outdir results -resume

ERROR ~ Error executing process > 'NFCORE_RNASEQ:PREPARE_GENOME:UNTAR_SALMON_INDEX (salmon.tar.gz)'

Caused by:
  Wave invalid response: [400] {"message":"Attribute `buildRepository` must be specified when using freeze mode"}


 -- Check '.nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

 -- Check '.nextflow.log' file for details

[maxulysse]

not working as expected

[maxulysse]

working locally: nf-core/rnaseq#1291

[maxulysse]

looks good to me

[maxulysse]

We need docs for it, plus bumping the minimal Nextflow version

[mirpedrol]

I see in the documentation that we would need to provide wave.build.repository together with wave.freeze = true. Is it required? Would it be safer to let users provide both parameters.