Dev -> Master for 2.14.0 #2958
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Dev -> Master for 2.14.0 #2958
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Gives an error message if safe_get() returns 401 (wrong GITHUB_TOKEN?)
Rename nf-test template files
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
…-values Add type of values to the error description for schema errors
Uses a click callback function to normalize the name of a module/subworkflow that is provided by the user on the CLI, so that names written in uppercase still resolve to the expected lowercase name. In case no argument is provided, the callback function simply returns None, and thus the current behaviour of a user being asked to select a component via an interactive prompt is maintained. The .casefold() method is used in favour of .lower() for slightly more robust case normalization. See: https://stackoverflow.com/questions/45745661/lower-vs-casefold-in-string-matching-and-converting-to-lowercase The callback is applied to all occurrences of "tool/module/subworkflow" arguments, except those in the the "create" functions, because these already contain an internal check that prompts to user to adhere to the lowercase naming convention. Updates to CHANGELOG.md. Co-authored-by: Adam Talbot <adam.talbot@seqera.io> Co-authored-by: Phil Ewels <phil.ewels@seqera.io> Co-authored-by: Arthur Gymer <24782660+awgymer@users.noreply.github.com>
The subworkflow info command referred to the subworkflow name as "tool" in its list of arguments. It has been renamed to "subworkflow" to align with the other subworkflow commands.
…wnloaded pipelines
Less strict logo comparison
Co-authored-by: Maxime U Garcia <maxime.garcia@seqera.io>
Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
Add `force_pr` flag to sync, to force a PR even though there are no changes committed
Fix nf-core lint ValueError when config is missing 'manifest.name'
Adds test data base path to classic test configs for more easily switching between test data location
bump version to 2.14.0
Linting: handle request errors more gracefully for actions validation
Codecov ReportAttention: Patch coverage is
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