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1.12 - Mercury Weasel
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@ewels ewels released this 19 Nov 13:46
1.12
b67fd2a
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Learn about vigilant mode.

A bit of a fast cycle on this release, it is needed urgently because GitHub Actions CI tests will be failing on all pipelines due to the set-env and add-path commands being depreciated (see the GitHub blog post for details).

Tools helper code

Template

  • Make CI comments work with PRs from forks [#765]
    • Branch protection and linting results should now show on all PRs
  • Updated GitHub issue templates, which had stopped working
  • Refactored GitHub Actions so that the AWS full-scale tests are triggered after docker build is finished
    • DockerHub push workflow split into two - one for dev, one for releases
  • Updated actions to no longer use set-env which is now depreciating [#739]
  • Added config import for test_full in nextflow.config
  • Switched depreciated $baseDir to $projectDir
  • Updated minimum Nextflow version to 20.04.10
  • Make Nextflow installation less verbose in GitHub Actions [#780]

Linting

  • Updated code to display colours in GitHub Actions log output
  • Allow tests to pass with dev version of nf-core/tools (previous failure due to base image version)
  • Lint code no longer tries to post GitHub PR comments. This is now done in a GitHub Action only.
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