add csv to output

nf-core · Jun 28, 2024 · 2be65c2 · 2be65c2
1 parent 07461af
commit 2be65c2
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diff --git a/modules/local/datavzrd_input.nf → modules/local/create_datavzrd_input.nf b/modules/local/datavzrd_input.nf → modules/local/create_datavzrd_input.nf
@@ -1,4 +1,4 @@
-process DATAVZRD_INPUT {
+process CREATE_DATAVZRD_INPUT {
     tag "$meta.id"
     label 'process_single'
 
@@ -7,7 +7,7 @@ process DATAVZRD_INPUT {
     tuple val(meta), path(csv)
 
     output:
-    tuple val(meta), path("*.yaml"), emit: config
+    tuple val(meta), path("*.yaml"), path(csv), emit: config
 
     script:
     """

diff --git a/subworkflows/local/report_benchmark_statistics.nf b/subworkflows/local/report_benchmark_statistics.nf
@@ -31,7 +31,7 @@ workflow REPORT_BENCHMARK_STATISTICS {
 
     def template = new File("${workflow.projectDir}/assets/datavzrd/datavzrd.template.yaml")
 
-    DATAVZRD_INPUT {
+    CREATE_DATAVZRD_INPUT {
         [ [ id:"datavzrd_template" ], template ]
         MERGE_REPORTS.out.summary
     }