add dictionary

nf-core · Aug 12, 2024 · 7d11446 · 7d11446
1 parent 5b280d2
commit 7d11446
Showing 1 changed file with 6 additions and 5 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -13,9 +13,10 @@ params {
     // Input options
     input                      = null
     outdir                     = "results"
-    sample                     = null // "HG002,SEQC2"
-    analysis                   = null // "germline,somatic"
-    sdf                        = null // The SDF format file needed by rtgtools
+    sample                     = null
+    analysis                   = null
+    sdf                        = null
+    dictionary                 = null
     liftover                   = false
 
     // Benchmarking method
@@ -24,8 +25,8 @@ params {
     //  Preprocess spesific parameters
     // normalization includes braking down multiallelic samples -m any
     // deduplication removes one of the variants in the same position
-    preprocess                 = "" //normalization,deduplication,prepy,filter_contigs
-    sv_standardization         = "" // homogenize,svync
+    preprocess                 = ""
+    sv_standardization         = ""
 
     // Filtering parameters
     // minsize effects both truvari and variantbenchmarkingmark in different ways! svbechmark filters both base and comp calls