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ENH: Add MSMSulc #313

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ENH: Add MSMSulc #313

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@mgxd mgxd commented Sep 11, 2023

Following implementation in nipreps/fmriprep#3085

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mgxd commented Sep 28, 2023

Currently running into the following:

Node: nibabies_23_2_wf.single_subject_XXXXXX_XX_wf.infant_anat_wf.sphere_reg_wf.msm_sulc_wf.msmsulc
Working directory: /wd/nibabies_23_2_wf/single_subject_XXXXXX_XX_wf/infant_anat_wf/sphere_reg_wf/msm_sulc_wf/msmsulc

Node inputs:

args = <undefined>
config_file = /opt/conda/envs/nibabies/lib/python3.10/site-packages/smriprep/data/msm/MSMSulcStrainFinalconf
environ = {}
in_data = <undefined>
in_mesh = ['/wd/nibabies_23_2_wf/single_subject_XXXXXX_XX_wf/infant_anat_wf/sphere_reg_wf/msm_sulc_wf/apply_surface_affine/mapflow/_apply_surface_affine0/lh.sphere_converted_xformed.surf.gii', '/wd/nibabies_23_2_wf/single_subject_XXXXXX_XX_wf/infant_anat_wf/sphere_reg_wf/msm_sulc_wf/apply_surface_affine/mapflow/_apply_surface_affine1/rh.sphere_converted_xformed.surf.gii']
in_register = <undefined>
in_weight = <undefined>
levels = <undefined>
out_base = ['lh.', 'rh.']
output_format = <undefined>
reference_data = ['/home/feczk001/tmadison/.cache/templateflow/tpl-fsaverage/tpl-fsaverage_hemi-L_den-164k_sulc.shape.gii', '/home/feczk001/tmadison/.cache/templateflow/tpl-fsaverage/tpl-fsaverage_hemi-R_den-164k_sulc.shape.gii']
reference_mesh = ['/home/feczk001/tmadison/.cache/templateflow/tpl-fsaverage/tpl-fsaverage_hemi-L_den-164k_desc-std_sphere.surf.gii', '/home/feczk001/tmadison/.cache/templateflow/tpl-fsaverage/tpl-fsaverage_hemi-R_den-164k_desc-std_sphere.surf.gii']
reference_weight = <undefined>
smooth_output_sigma = <undefined>
transformed_mesh = <undefined>
verbose = True

Traceback (most recent call last):
  File "/opt/conda/envs/nibabies/lib/python3.10/site-packages/nipype/pipeline/plugins/multiproc.py", line 292, in _send_procs_to_workers
    num_subnodes = self.procs[jobid].num_subnodes()
  File "/opt/conda/envs/nibabies/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 1309, in num_subnodes
    self._check_iterfield()
  File "/opt/conda/envs/nibabies/lib/python3.10/site-packages/nipype/pipeline/engine/nodes.py", line 1332, in _check_iterfield
    raise ValueError(
ValueError: Input in_data was not set but it is listed in iterfields.

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