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ENH: Serialize+parallelize 4D apply() into 3D+t and add 'low memory' loading #436

ENH: Serialize+parallelize 4D apply() into 3D+t and add 'low memory' loading

ENH: Serialize+parallelize 4D apply() into 3D+t and add 'low memory' loading #436

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Python package
on:
push:
branches: [ '*' ]
tags: [ '*' ]
pull_request:
branches: [ master, 'maint/*' ]
jobs:
build:
if: "!contains(github.event.head_commit.message, '[skip ci]')"
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
steps:
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Build package
run: |
pipx run build
- name: Determine expected version
run: |
python -m venv /tmp/getversion
source /tmp/getversion/bin/activate
python -m pip install setuptools_scm
# Interpolate version
if [[ "$GITHUB_REF" == refs/tags/* ]]; then
TAG=${GITHUB_REF##*/}
fi
THISVERSION=$( python -m setuptools_scm )
THISVERSION=${TAG:-$THISVERSION}
echo "Expected VERSION: \"${THISVERSION}\""
echo "THISVERSION=${THISVERSION}" >> ${GITHUB_ENV}
- name: Install in confined environment [sdist]
run: |
python -m venv /tmp/install_sdist
source /tmp/install_sdist/bin/activate
python -m pip install --upgrade pip
python -m pip install dist/nitransforms*.tar.gz
INSTALLED_VERSION=$(python -c 'import nitransforms; print(nitransforms.__version__, end="")')
echo "VERSION: \"${THISVERSION}\""
echo "INSTALLED: \"${INSTALLED_VERSION}\""
test "${INSTALLED_VERSION}" = "${THISVERSION}"
- name: Install in confined environment [wheel]
run: |
python -m venv /tmp/install_wheel
source /tmp/install_wheel/bin/activate
python -m pip install --upgrade pip
python -m pip install dist/nitransforms*.whl
INSTALLED_VERSION=$(python -c 'import nitransforms; print(nitransforms.__version__, end="")')
echo "INSTALLED: \"${INSTALLED_VERSION}\""
test "${INSTALLED_VERSION}" = "${THISVERSION}"
- name: Install in confined environment [pip install .]
run: |
python -m venv /tmp/setup_install
source /tmp/setup_install/bin/activate
python -m pip install --upgrade pip wheel
python -m pip install .
INSTALLED_VERSION=$(python -c 'import nitransforms; print(nitransforms.__version__, end="")')
echo "INSTALLED: \"${INSTALLED_VERSION}\""
test "${INSTALLED_VERSION}" = "${THISVERSION}"
- name: Install in confined environment [pip install -e .]
run: |
python -m venv /tmp/setup_develop
source /tmp/setup_develop/bin/activate
python -m pip install pip
python -m pip install --upgrade pip wheel
python -m pip install -e .
INSTALLED_VERSION=$(python -c 'import nitransforms; print(nitransforms.__version__, end="")')
echo "INSTALLED: \"${INSTALLED_VERSION}\""
test "${INSTALLED_VERSION}" = "${THISVERSION}"
flake8:
if: "!contains(github.event.head_commit.message, '[skip ci]')"
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Set up Python 3
uses: actions/setup-python@v4
- run: pipx run flake8 nitransforms