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  1. Microbiome-FMT-Recovery Microbiome-FMT-Recovery Public

    Reproducible computational analysis of gut microbiome dynamics following fecal microbiota transplantation for recurrent C. difficile infection.

    Shell 1

  2. ELISA-RShiny-Apps ELISA-RShiny-Apps Public

    RShiny apps I created for Kemin to automate ELISA assay planning, data quality assurance, and data analysis.

    R 1

  3. DE-and-Pathway-Analysis-HNSCC DE-and-Pathway-Analysis-HNSCC Public

    Given a gene expression dataset (from RNAseq) and a clinical dataset with survival information and tumor status, conduct differential expression analysis and pathway analysis between tumor and tumo…

    R 1

  4. Cytokine-Proteomics-for-IPF Cytokine-Proteomics-for-IPF Public

    Olink proteomics to identify differences in the cytokine profiles of patients with idiopathic pulmonary fibrosis, rheumatoid arthritis, and scleroderma

    R 1

  5. Python-for-Computational-Biology-and-Bioinformatics-Specialization Python-for-Computational-Biology-and-Bioinformatics-Specialization Public

    DNA replication, motif search, genome sequencing, molecular evolution, and more in Python (UC San Diego Bioinformatics Specialization)

    Python 1

  6. Genomic-Data-Science-Specialization Genomic-Data-Science-Specialization Public

    Johns Hopkins Genomic Data Science Specialization coursework in NGS, sequence analysis, statistical genomics, Python, R/Bioconductor, and command-line bioinformatics.

    Python 2