Release v4.12.3

opencb · Apr 12, 2023 · 3624baf · 3624baf
1 parent fd4fe86
commit 3624baf
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Showing 8 changed files with 9 additions and 8 deletions.
diff --git a/cellbase-app/pom.xml b/cellbase-app/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.opencb.cellbase</groupId>
         <artifactId>cellbase</artifactId>
-        <version>4.12.2</version>
+        <version>4.12.3</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/cellbase-client/pom.xml b/cellbase-client/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.opencb.cellbase</groupId>
         <artifactId>cellbase</artifactId>
-        <version>4.12.2</version>
+        <version>4.12.3</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/cellbase-core/pom.xml b/cellbase-core/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.opencb.cellbase</groupId>
         <artifactId>cellbase</artifactId>
-        <version>4.12.2</version>
+        <version>4.12.3</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/...src/main/java/org/opencb/cellbase/core/variant/annotation/hgvs/HgvsProteinCalculator.java b/...src/main/java/org/opencb/cellbase/core/variant/annotation/hgvs/HgvsProteinCalculator.java
@@ -913,6 +913,7 @@ private HgvsProtein calculateFrameshiftHgvs() {
                 currentAaIndex++;
             }
         } else if (transcript.getProteinSequence().startsWith("M")
+                && alternateCdnaSeq.length() >= transcript.getCdnaCodingStart() + 3
                 && !"ATG".equals(alternateCdnaSeq.substring(transcript.getCdnaCodingStart(), transcript.getCdnaCodingStart() + 3))) {
             /*
             First codon is NOT ATG but protein sequence starts with M. This is due to Ensembl curation. From Ensembl:

diff --git a/cellbase-lib/pom.xml b/cellbase-lib/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.opencb.cellbase</groupId>
         <artifactId>cellbase</artifactId>
-        <version>4.12.2</version>
+        <version>4.12.3</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/cellbase-server/pom.xml b/cellbase-server/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.opencb.cellbase</groupId>
         <artifactId>cellbase</artifactId>
-        <version>4.12.2</version>
+        <version>4.12.3</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/cellbase-test/pom.xml b/cellbase-test/pom.xml
@@ -22,7 +22,7 @@
 
     <groupId>org.opencb.cellbase</groupId>
     <artifactId>cellbase-test</artifactId>
-    <version>4.12.2</version>
+    <version>4.12.3</version>
     <packaging>pom</packaging>
 
     <dependencies>

diff --git a/pom.xml b/pom.xml
@@ -6,7 +6,7 @@
 
     <groupId>org.opencb.cellbase</groupId>
     <artifactId>cellbase</artifactId>
-    <version>4.12.2</version>
+    <version>4.12.3</version>
     <packaging>pom</packaging>
 
     <name>CellBase project</name>
@@ -22,7 +22,7 @@
     </modules>
 
     <properties>
-        <cellbase.version>4.12.2</cellbase.version>
+        <cellbase.version>4.12.3</cellbase.version>
         <compileSource>1.8</compileSource>
         <java-common-libs.version>3.7.5</java-common-libs.version>
         <biodata.version>1.5.6</biodata.version>