v4.5.4

• variant-annotation command no longer fails once the annotation process has finished
• Java REST Client
  • Bugfix. When multiple ids were used as an input each of them returning more than 1000 results, could potentially happen that these result lists were not appropriately processed.
  • Thread safe issue fixed at CellBaseClient.
• Gene model: transcripts.xrefs field will now always include geneName, geneId, transcriptName and transcriptId, even if the Ensembl API returns no xrefs at all
• Improved initialisation of heritableTraitList and genomicFeatureList during ClinVar parsing to avoid Avro serialization issues
• If no path at all was provided for the variant-annotation output, i.e. -o test.json.gz rather than -o ./test.json.gz, an error was raised. This is now checked and error avoided.