script updates

opensha · Oct 18, 2023 · 6137dca · 6137dca
1 parent 89bb8d7
commit 6137dca
Show file tree

Hide file tree

Showing 2 changed files with 12 additions and 1 deletion.
diff --git a/parallel/slurm_sbin/detect_first_running.sh b/parallel/slurm_sbin/detect_first_running.sh
@@ -1,3 +1,4 @@
 #!/bin/bash
 
-squeue -t R -u $USER -o %A -h | sort | head -n 1
+squeue -t R -u $USER -o "%A %j" -h | grep -v interact | awk '{print $1}' | sort | head -n 1
+#squeue -t R -u $USER -o %A -h | grep -v interact | sort | head -n 1
diff --git a/parallel/slurm_sbin/locate_job_stdout.sh b/parallel/slurm_sbin/locate_job_stdout.sh
@@ -14,6 +14,11 @@ else
 	ID=$1
 fi
 
+if [[ ! $ID -gt 0 ]];then
+	echo "Job ID not supplied or not found: $ID"
+	exit 1
+fi
+
 DIR=`squeue -h -j $ID -o %Z`
 
 if [[ ! -e $DIR ]];then
@@ -23,6 +28,11 @@ fi
 
 OUT=`find $DIR -maxdepth 1 -name "*.o${ID}"`
 
+if [[ ! -e $OUT ]];then
+	# try another format
+	OUT=`find $DIR -maxdepth 1 -name "*${ID}.out"`
+fi
+
 if [[ ! -e $OUT ]];then
 	echo "Output not found for $ID in $DIR: $OUT"
 	exit 1