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    30 repositories

    • dgrpool

      Public
      Scripts used for the DGRPool ELife manuscript
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • dgrpool_web

      Public
      DGRPool is a web application designed to serve as a comprehensive repository for Drosophila Genetic Reference Panel (DGRP) phenotyping datasets.
      Ruby
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • ASAP

      Public
      ASAP : Automated Single-cell Analysis Pipeline
      visualizationbioinformaticsenrichmentrna-seqclusteringweb-appgene-expressionontologyweb-applicationbioinformatics-pipeline
      Java
      •
      GNU General Public License v3.0
      •10•24•9•0•Updated Oct 16, 2024Oct 16, 2024

    • asap_run

      Public
      ASAP container for running all pipeline code
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • scfair

      Public
      an initiative to standardize single-cell genomics data and promote findable, accessible, interoperable, and reusable single-cell data.
      JavaScript
      •0•0•8•0•Updated Oct 3, 2024Oct 3, 2024

    • Neuro_Droso_ND75KD

      Public
      ND75KD project
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • ChromatinHD

      Public
      High-definition modeling of chromatin + transcriptomics data
      Python
      •
      MIT License
      •0•17•5•0•Updated Aug 13, 2024Aug 13, 2024

    • Chromatin_modules

      Public
      Chromatin Modules across cell types.The code
      Jupyter Notebook
      •
      MIT License
      •0•4•0•0•Updated Jul 16, 2024Jul 16, 2024

    • Context-TFs

      Public
      Material and source code for Kribelbauer et al.
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • TF-seq

      Public
      Material and source code for TF-seq manuscript
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Jun 18, 2024Jun 18, 2024

    • updeplasrv1

      Public
      Scripts for updeplasrv1 Web server (Dockerized)
      CSS
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 5, 2024Apr 5, 2024

    • FastReadCounter

      Public
      Tool for fast counting of reads from BAM file into genomic ranges (GTF, BED, VCF)
      Java
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Dec 20, 2023Dec 20, 2023

    • TFseqTools

      Public
      A suite of tools for the pre-processing of TF-seq data
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 14, 2023Dec 14, 2023

    • Numts_Aaeg

      Public
      HTML
      •0•0•0•0•Updated Dec 12, 2023Dec 12, 2023

    • SIB-ASAP-2023

      Public
      Using ASAP for Single-Cell Analysis - 2023 Course
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Nov 21, 2023Nov 21, 2023

    • BRB-seqTools

      Public
      Suite of tools for processing BRB-seq data
      Java
      •
      Other
      •10•26•2•0•Updated Aug 31, 2023Aug 31, 2023

    • ChromatinHD_manuscript

      Public
      Python
      •0•1•0•0•Updated Jul 31, 2023Jul 31, 2023

    • Meireles-Filho_Litovchenko2019

      Public
      Source code to support the paper: “Extensive tissue-specific expression variation and novel regulators underlying circadian behavior”
      bashrrna-seq-analysisngs-analysisdgrpcircadian-rhythms
      R
      •0•0•0•0•Updated Jan 16, 2023Jan 16, 2023

    • BIO373_GeneticsAndGenomics

      Public
      Biofinformatics support for the Genetics and Genomics class (BIO373)
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 11, 2022Nov 11, 2022

    • ENHPATHY4

      Public
      ENHPATHY Event IV - Hands-on session on analyzing single-cell data
      visualizationanalysistranscriptomicssingle-cell
      HTML
      •1•0•0•0•Updated Nov 10, 2022Nov 10, 2022

    • BRB-seq

      Public
      Code and scripts for reproducing figures of BRB-seq paper
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 5, 2022Oct 5, 2022

    • BeversLitovchenko2018

      Public
      Source code to support the paper: "Extensive mitochondrial population structure and haplotype-specific variation in metabolic phenotypes in the Drosophila Genetic Reference Panel"
      javabashrvariant-callingngs-analysismitochondriadgrpnumts
      R
      •0•3•0•0•Updated Sep 9, 2022Sep 9, 2022

    • Live-seq

      Public
      Live-seq
      R
      •
      GNU General Public License v3.0
      •5•7•0•0•Updated Aug 18, 2022Aug 18, 2022

    • BiSS

      Public
      Yeast one-hybrid screening for DNA-protein interactions
      PHP
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 28, 2022Jun 28, 2022

    • DisCo_source

      Public
      C++
      •1•1•0•0•Updated Sep 14, 2021Sep 14, 2021

    • Frochaux_BouSleiman_2020

      Public
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 8, 2019Oct 8, 2019

    • Areg

      Public
      Processing of single-cell (Fluidigm C1 and 10x) and population (Truseq and brbseq) RNA-seq data related to Areg discovery and characterisation in mouse subcutaneous stromal vascular fraction cells
      HTML
      •1•3•1•0•Updated Jul 4, 2018Jul 4, 2018

    • SSPCI

      Public
      Somatic stem and progenitor cell identification based on single-cell RNA-sequencing data
      R
      •0•3•0•0•Updated May 2, 2018May 2, 2018

    • projects

      Public
      a list of all projects
      MIT License
      •16•0•0•0•Updated Apr 25, 2018Apr 25, 2018

    • SmartSeq2

      Public
      0•1•0•0•Updated Apr 7, 2017Apr 7, 2017