Repositories list

• dds_web

  Public
  A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).

  pythonflask

  Python

  •

  Other

  •8•8•0•2•Updated Nov 1, 2024Nov 1, 2024

• genome-portal

  Public
  This is the repository for the Swedish Reference Genome Portal, a platform facilitating access and discovery of genome data of non-model eukaryotic species studied in Sweden

  HTML

  •

  MIT License

  •0•0•0•6•Updated Nov 1, 2024Nov 1, 2024

• pathogens-portal

  Public
  Swedish pathogens portal

  bootstrapmarkdownhugo+ 1covid-19

  HTML

  •

  MIT License

  •27•12•0•1•Updated Oct 31, 2024Oct 31, 2024

• serve

  Public
  SciLifeLab Serve is a platform offering machine learning model serving, data science app hosting (Shiny, Gradio, Streamlit, Dash, etc.), and other tools to life science researchers affiliated with a Swedish research institute.

  JavaScript

  •

  Apache License 2.0

  •0•3•0•3•Updated Oct 31, 2024Oct 31, 2024

• serve-tutorials

  Public
  Tutorials for running applications on Scilifelab Serve.

  Jupyter Notebook

  •1•5•0•0•Updated Oct 31, 2024Oct 31, 2024

• RDM-guidelines

  Public
  This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.

  HTML

  •

  Other

  •3•5•15•1•Updated Oct 31, 2024Oct 31, 2024

• data.scilifelab.se

  Public
  SciLifeLab Data Platform

  HTML

  •

  MIT License

  •4•2•0•0•Updated Oct 31, 2024Oct 31, 2024

• serve-charts

  Public
  SciLifeLab Serve charts repository

  Smarty

  •

  Other

  •0•1•0•1•Updated Oct 30, 2024Oct 30, 2024

• shiny-adhd-medication-sweden

  Public
  Dashboard visualising ADHD medication collection among girls and boys (0-19 year olds) in Sweden over time.

  rshinyshiny-apps

  R

  •

  MIT License

  •0•1•0•0•Updated Oct 30, 2024Oct 30, 2024

• precision-medicine-portal-frontend

  Public
  React project for the frontend of the Precision Medicine Portal by DC Data Science Node

  TypeScript

  •

  MIT License

  •0•1•0•0•Updated Oct 29, 2024Oct 29, 2024

• dds_cli

  Public
  The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.

  clickpythoncommand-line

  Python

  •

  MIT License

  •12•9•3•1•Updated Oct 29, 2024Oct 29, 2024

• dc-dynamic

  Public
  Python

  •1•2•0•0•Updated Oct 25, 2024Oct 25, 2024

• pathogens-portal-visualisations

  Public
  This repository holds the visualisations produced for the Swedish Pathogens Portal

  Python

  •

  MIT License

  •0•4•0•0•Updated Oct 25, 2024Oct 25, 2024

• pathogens-portal-scripts

  Public
  This repository holds the scripts produced for the Swedish Pathogens Portal

  Python

  •

  MIT License

  •0•1•0•0•Updated Oct 18, 2024Oct 18, 2024

• serve-load-testing

  Public
  Load testing for SciLifeLab Serve using the Python Locust library.

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Oct 11, 2024Oct 11, 2024

• Publications

  Public
  A web-based publications reference database system.

  Python

  •

  MIT License

  •3•10•9•8•Updated Oct 10, 2024Oct 10, 2024

• serve-images

  Public
  All files related to images used in Serve

  Python

  •1•1•2•0•Updated Oct 4, 2024Oct 4, 2024

• data-platform-scripts

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• dsw-appendix

  Public
  More information for DSW KM topics

  CSS

  •

  Other

  •1•1•0•3•Updated Sep 27, 2024Sep 27, 2024

• scilifelabdatacentre.github.io

  Public
  GH Pages for a workshop organized by DC

  JavaScript

  •0•1•0•0•Updated Sep 18, 2024Sep 18, 2024

• serve-event-listener

  Public
  This repository contains the code for the serve event listener functionality

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Sep 11, 2024Sep 11, 2024

• dds_workshop

  Public
  Documentation for the DDS Workshop (Autumn 2024)

  MIT License

  •0•3•0•0•Updated Aug 29, 2024Aug 29, 2024

• DIGIfor1Health_web

  Public
  Liquid

  •

  MIT License

  •0•0•4•0•Updated Aug 14, 2024Aug 14, 2024

• sodar-docker-compose

  Public
  Setup SODAR using Docker Compose

  Shell

  •

  MIT License

  •3•0•0•0•Updated Aug 8, 2024Aug 8, 2024

• pyjb

  Public
  Jupyter widgets for the JBrowse2 genome browser

  JavaScript

  •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

• Anubis

  Public
  Proposal submission and review handling system.

  Python

  •

  MIT License

  •2•2•4•9•Updated Jul 11, 2024Jul 11, 2024

• DbShare

  Public
  Web service to share and query tabular data sets stored in SQLite3 databases.

  Python

  •

  MIT License

  •0•3•6•7•Updated Jul 9, 2024Jul 9, 2024

• DataGraphics

  Public
  Post datasets and graphics on the web using Vega-Lite graphics.

  Python

  •

  MIT License

  •0•2•11•9•Updated Jul 9, 2024Jul 9, 2024

• blobserver

  Public
  Simple web app to server blobs (files containing any data) publicly. A file can be uploaded or updated by an authorized account, either via the web interface or via a script.

  Python

  •

  MIT License

  •0•2•2•7•Updated Jul 9, 2024Jul 9, 2024

• OrderPortal

  Public
  A portal for orders (requests, project applications, etc) to a facility from its users.

  Python

  •

  MIT License

  •12•6•6•6•Updated Jul 6, 2024Jul 6, 2024