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- Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies
- A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.
- R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters
- R package to clean and standardize epidemiological data
- R package with tools for estimating vaccine effectiveness and vaccine related metrics
readepi
PublicAn R package for importing epi data into R.- Data Wrangling and Automated Reports from 'SIVIGILA' source
epitkit
Publictutorials-late
Publicepichains
PublicMethods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process modelscfr
PublicR package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-seriessimulist
Publicshinyapps-tracelac
Publictutorials-middle
Public- R-universe for the epiverse-trace GitHub organisation
gam-summit
Publiclinelist
PublicR package for handling linelist dataetdashboard
Publictutorials-middle-es
Publicepimodelac
Publicgit-rstudio-basics
PublicVersion Control with Git using Rstudioresearch-compendium
Publictutorials-early
Publictutorials
Publicepisoap
Public[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templatesdatatagr
Publicepinetwork
Public