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@gomezlab Code for Gomez Lab at UNC-Chapel Hill

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    28 repositories

    • genie

      Public
      code to download/prep genie data
      Jupyter Notebook
      •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

    • PDACperturbations

      Public
      Data and code associated with pancreatic cancer drug screening and modeling
      HTML
      •1•1•0•0•Updated Jun 12, 2024Jun 12, 2024

    • kinase_inhibitor_pred_app

      Public
      Shiny application for predicting kinase inhibitor effects on cell viability
      R
      •0•0•0•0•Updated May 9, 2024May 9, 2024

    • kinotype_combination_prediction

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 19, 2024Feb 19, 2024

    • kinomescan_viability_prediction

      Public
      Code for processing kinomescan data for cell viability prediction
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Sep 20, 2023Sep 20, 2023

    • bryant_optimization

      Public
      code to expedite fluorescence data analysis
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 2, 2023Aug 2, 2023

    • cd_postop

      Public
      Jupyter Notebook
      •0•1•0•0•Updated May 30, 2023May 30, 2023

    • cvsm

      Public
      Computer vision for specimen mammography
      Jupyter Notebook
      •0•2•0•0•Updated Apr 17, 2023Apr 17, 2023

    • colorectal_predictors

      Public
      Code to accompany colorectal surgery outcome predictors manuscripts
      Jupyter Notebook
      •2•1•0•0•Updated Feb 15, 2023Feb 15, 2023

    • ped_ibd_rnaseq

      Public
      R
      •0•1•0•0•Updated Nov 7, 2022Nov 7, 2022

    • kinotype_viability

      Public
      Code related to constructing and testing models for cell viability
      R
      •1•1•0•0•Updated Nov 2, 2022Nov 2, 2022

    • MBSAQIP_READMISSION

      Public
      Using ML to predict readmission following bariatric surgery
      Jupyter Notebook
      •1•0•0•0•Updated Aug 29, 2022Aug 29, 2022

    • nsqip_procedurespecific

      Public
      Predict procedure specific outcomes from the NSQIP database using neural networks and logistic regression
      Jupyter Notebook
      •3•1•0•0•Updated Jan 27, 2022Jan 27, 2022

    • PTEN_null_essential

      Public
      Code for searching a few databases for apparent essential pairs in cancer data
      0•0•0•0•Updated Mar 2, 2021Mar 2, 2021

    • EMBER

      Public
      Jupyter Notebook
      •3•2•0•0•Updated Dec 11, 2020Dec 11, 2020

    • kinotypeClusteringAndRegression

      Public
      Joint Repository of GR Metrics Regression and Kinase Interaction Network (KIN) Clustering
      systems-biologyproteomicsprotein-protein-interactiongraph-clusteringkinomekinasesphenotype-prediction
      Jupyter Notebook
      •0•0•0•0•Updated Apr 3, 2020Apr 3, 2020

    • single_invado_analysis

      Public
      Quantitative Analysis of Single Invadopodia
      HTML
      •0•0•0•0•Updated Jul 30, 2019Jul 30, 2019

    • segnet

      Public
      segNET is a suite of tools for identifying gene modules from complex genome-wide networks
      Jupyter Notebook
      •
      Other
      •1•0•0•0•Updated Apr 14, 2019Apr 14, 2019

    • MiscViz

      Public
      Visualizations and JavaScript objects for the GomezLab
      Jupyter Notebook
      •0•0•0•0•Updated Nov 15, 2018Nov 15, 2018

    • network-viz

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 18, 2018Oct 18, 2018

    • focal_adhesions

      Public
      Software for the Analysis of Focal Adhesion Images
      MATLAB
      •
      Other
      •1•0•0•0•Updated Mar 19, 2018Mar 19, 2018

    • subnetclustering

      Public
      Mathematica
      •0•0•0•0•Updated Mar 2, 2018Mar 2, 2018

    • exit

      Public
      Code used in the EXIT paper for sequence processing/analysis.
      R
      •
      GNU Lesser General Public License v3.0
      •1•0•0•0•Updated Nov 22, 2016Nov 22, 2016

    • liver-glycogen-model

      Public
      Code from the paper: Xu K, Morgan KT, Todd A, Elston TC and Gomez SM. A whole-body model for glycogen regulation reveals a critical role for substrate cycling in maintaining blood glucose homeostasis. PLoS Computational Biology. 2011. Dec;7(12):e1002272.
      MATLAB
      •0•0•0•0•Updated Jan 19, 2015Jan 19, 2015

    • invado_population

      Public
      Quantification of Invadopodia activity in cell populations
      MATLAB
      •0•0•0•0•Updated Nov 11, 2014Nov 11, 2014

    • network_vis_webapp

      Public
      0•0•0•0•Updated Aug 27, 2014Aug 27, 2014

    • xCEED

      Public
      xCEED: Methods for the comparison of phylogenetic trees
      0•1•0•0•Updated Jun 10, 2013Jun 10, 2013

    • cali_analysis

      Public
      Software for the Analysis of the Effects of CALI Before/After Experiments Around the Cell Edge
      MATLAB
      •0•0•0•0•Updated May 20, 2013May 20, 2013