Repositories list

• Points2Regions

  Public
  Simple tool for clustering spatial points with categorical labels.

  Jupyter Notebook

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  MIT License

  •0•4•0•0•Updated Jul 29, 2024Jul 29, 2024

• is3g

  Public
  In Situ Sequencing Segmentation

  Jupyter Notebook

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  BSD 3-Clause "New" or "Revised" License

  •0•1•2•1•Updated Jul 2, 2024Jul 2, 2024

• analytical-enrichment-test

  Public
  Analytical neighborhood enrichment test

  Jupyter Notebook

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  MIT License

  •0•0•0•0•Updated Feb 22, 2024Feb 22, 2024

• napari-points2regions

  Public
  A napari plugin for Points2Regions

  Python

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  MIT License

  •0•0•0•0•Updated Jan 26, 2024Jan 26, 2024

• ISS_Decoding_colab

  Public
  In Situ Sequencing decoding compatible with Google Colab

  Jupyter Notebook

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  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Sep 6, 2023Sep 6, 2023

• spage2vec_heart

  Public
  spage2vec, developmental human heart, in situ sequensing

  Jupyter Notebook

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  Apache License 2.0

  •0•0•0•0•Updated May 29, 2022May 29, 2022

• spage2vec

  Public
  spatial-data-analysisgraphsagein-situ-hybridization+ 1in-situ-sequencing

  Jupyter Notebook

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  Apache License 2.0

  •4•14•1•0•Updated Jul 1, 2021Jul 1, 2021

• ML-celltype-neighbor

  Public
  Our workflow for our paper "“Machine learningfor cell classification and neighborhood analysis in glioma tissue"

  Python

  •

  GNU General Public License v3.0

  •1•3•0•0•Updated Apr 30, 2021Apr 30, 2021

• InSilicoTFM

  Public
  🧫 Framework for predicting cellular traction forces with Deep Learning. 🤖

  Jupyter Notebook

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  MIT License

  •0•1•0•0•Updated Feb 19, 2021Feb 19, 2021

• graph-iss

  Public
  Graph-based Decoding for In Situ Sequencing

  Jupyter Notebook

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  Apache License 2.0

  •4•10•0•0•Updated Jul 2, 2020Jul 2, 2020

• TMA-studies

  Public
  JavaScript

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  GNU General Public License v3.0

  •0•2•0•0•Updated Jun 15, 2020Jun 15, 2020